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    NECAB3 N-terminal EF-hand calcium binding protein 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 514695, updated on 4-Oct-2024

    Summary

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    Official Symbol
    NECAB3provided by VGNC
    Official Full Name
    N-terminal EF-hand calcium binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:31979
    See related
    BGD:BT22758; Ensembl:ENSBTAG00000003946
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NECAB3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (63108927..63127570, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 2 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene chromosome 13 C20orf144 homolog Neighboring gene actin like 10 Neighboring gene E2F transcription factor 1 Neighboring gene peroxisomal membrane protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC148647

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of amyloid precursor protein biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi cis cisterna IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-terminal EF-hand calcium-binding protein 3
    Names
    X11L-binding protein 51
    amyloid beta A4 protein-binding family A member 2-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081589.2 → NP_001075058.1  N-terminal EF-hand calcium-binding protein 3

      See identical proteins and their annotated locations for NP_001075058.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133436
      UniProtKB/Swiss-Prot
      A2VDW6
      UniProtKB/TrEMBL
      A0A3Q1M0L1
      Related
      ENSBTAP00000005154.6, ENSBTAT00000005154.6
      Conserved Domains (3) summary
      pfam03992
      Location:258 → 331
      ABM; Antibiotic biosynthesis monooxygenase
      pfam13202
      Location:37 → 59
      EF-hand_5; EF hand
      pfam13499
      Location:35 → 61
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      63108927..63127570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VDW6.1 GenPept UniProtKB/Swiss-Prot:A2VDW6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials