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    SIDT2 SID1 transmembrane family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 513462, updated on 10-Oct-2024

    Summary

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    Official Symbol
    SIDT2provided by VGNC
    Official Full Name
    SID1 transmembrane family member 2provided by VGNC
    Primary source
    VGNC:VGNC:34615
    See related
    BGD:BT18987; Ensembl:ENSBTAG00000007192
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SIDT2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (27871969..27887601)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene SIK family kinase 3 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2 Neighboring gene transgelin Neighboring gene proprotein convertase subtilisin/kexin type 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SID1 transmembrane family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024530.3 → NP_001019701.3  SID1 transmembrane family member 2 precursor

      Status: VALIDATED

      Source sequence(s)
      NKLS02000015
      UniProtKB/TrEMBL
      A0A8J8XYM0, E1BB88, V6F840
      Related
      ENSBTAP00000045132.4, ENSBTAT00000047991.5
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 831
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27871969..27887601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059874679.1 → XP_059730662.1  SID1 transmembrane family member 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T4B8
      Related
      ENSBTAP00000092644.1, ENSBTAT00000093472.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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