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    RAE1 ribonucleic acid export 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 513080, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RAE1provided by VGNC
    Official Full Name
    ribonucleic acid export 1provided by VGNC
    Primary source
    VGNC:VGNC:33692
    See related
    BGD:BT22625; Ensembl:ENSBTAG00000010934
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RAE1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (58788134..58805841, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 38 Neighboring gene CCCTC-binding factor like Neighboring gene uncharacterized LOC132346940 Neighboring gene uncharacterized LOC112449319 Neighboring gene uncharacterized LOC132346941 Neighboring gene SPO11 initiator of meiotic double stranded breaks

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134058

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mRNA export factor
    Names
    RAE1 RNA export 1 homolog
    mRNA-associated protein mrnp 41
    rae1 protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015585.1 → NP_001015585.1  mRNA export factor

      See identical proteins and their annotated locations for NP_001015585.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021016
      UniProtKB/Swiss-Prot
      Q5E9A4
      Related
      ENSBTAP00000014523.3, ENSBTAT00000014523.5
      Conserved Domains (2) summary
      sd00039
      Location:42 → 84
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:40 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      58788134..58805841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010811444.4 → XP_010809746.1  mRNA export factor isoform X2

      UniProtKB/TrEMBL
      A0A3Q1NI02
      Related
      ENSBTAP00000071611.1, ENSBTAT00000072066.2
      Conserved Domains (3) summary
      COG2319
      Location:33 → 308
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:42 → 84
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:40 → 306
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_025000533.2 → XP_024856301.1  mRNA export factor isoform X1

      UniProtKB/Swiss-Prot
      Q5E9A4
      Conserved Domains (2) summary
      sd00039
      Location:42 → 84
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:40 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_059892552.1 → XP_059748535.1  mRNA export factor isoform X1

      UniProtKB/Swiss-Prot
      Q5E9A4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9A4.1 GenPept UniProtKB/Swiss-Prot:Q5E9A4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.