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    COL3A1 collagen type III alpha 1 chain [ Bos taurus (domestic cattle) ]

    Gene ID: 510833, updated on 4-Oct-2024

    Summary

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    Official Symbol
    COL3A1provided by VGNC
    Official Full Name
    collagen type III alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:27565
    See related
    BGD:BT10832; Ensembl:ENSBTAG00000021466
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See COL3A1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (7375278..7414912, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-2(V) chain-like Neighboring gene microRNA mir-2917 Neighboring gene collagen type V alpha 2 chain Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112442304

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The covalent structure of calf skin type III collagen. VI. The amino acid sequence of the carboxyterminal cyanogen bromide peptide alpha 1(III)CB9B (position 928--1028). Allmann H, et al. Hoppe Seylers Z Physiol Chem, 1979 Jul. PMID 488911
    2. The covalent structure of calf skin type III collagen. V. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB9A (position 789 to 927). Dewes H, et al. Hoppe Seylers Z Physiol Chem, 1979 Jul. PMID 488910
    3. The covalent structure of calf skin type III collagen. IV. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB5 (positions 552--788). Lang H, et al. Hoppe Seylers Z Physiol Chem, 1979 Jul. PMID 488909
    4. The covalent structure of calf skin type III collagen. III. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB4 (positions 403--551). Bentz H, et al. Hoppe Seylers Z Physiol Chem, 1979 Jul. PMID 488908
    5. The covalent structure of calf skin type III collagen. II. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB1,8,10,2(Positions 223--402). Dewes H, et al. Hoppe Seylers Z Physiol Chem, 1979 Jul. PMID 488907

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. specific ADAMTS-2 domains cleave the aminopropeptide of fibrillar procollagens types I-III and V
      Title: Domains and maturation processes that regulate the activity of ADAMTS-2, a metalloproteinase cleaving the aminopropeptide of fibrillar procollagens types I-III and V.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139882

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(III) chain
    Names
    collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)
    collagen, type III, alpha 1 chain, fibril forming

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076831.1 → NP_001070299.1  collagen alpha-1(III) chain precursor

      See identical proteins and their annotated locations for NP_001070299.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123469
      UniProtKB/TrEMBL
      F1MXS8, Q08E14
      Related
      ENSBTAP00000028617.6, ENSBTAT00000028617.6
      Conserved Domains (3) summary
      pfam01391
      Location:234 → 293
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:32 → 88
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1233 → 1465
      COLFI; Fibrillar collagen C-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7375278..7414912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P04258.1 GenPept UniProtKB/Swiss-Prot:P04258

    Gene LinkOut

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