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    CARF calcium responsive transcription factor [ Bos taurus (domestic cattle) ]

    Gene ID: 509072, updated on 10-Oct-2024

    Summary

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    Official Symbol
    CARFprovided by VGNC
    Official Full Name
    calcium responsive transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:26765
    See related
    BGD:BT22005; Ensembl:ENSBTAG00000016000
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ALS2CR8
    Orthologs
    human mouse all
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    Genomic context

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    See CARF in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (91230567..91318258)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1 like Neighboring gene WD repeat domain 12 Neighboring gene large ribosomal subunit protein uL30-like Neighboring gene neurobeachin like 1 Neighboring gene cytochrome P450 family 20 subfamily A member 1 Neighboring gene abl interactor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-responsive transcription factor
    Names
    amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8
    amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032294.1 → NP_001027465.1  calcium-responsive transcription factor

      See identical proteins and their annotated locations for NP_001027465.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021831
      UniProtKB/Swiss-Prot
      Q58CW6
      UniProtKB/TrEMBL
      F1N5Z9
      Related
      ENSBTAP00000021288.6, ENSBTAT00000021288.6
      Conserved Domains (1) summary
      pfam15299
      Location:250 → 480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      91230567..91318258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892701.1 → XP_059748684.1  calcium-responsive transcription factor isoform X4

      UniProtKB/TrEMBL
      A0AAA9SP18
      Related
      ENSBTAP00000084629.1, ENSBTAT00000101239.1

    2. XM_059892689.1 → XP_059748672.1  calcium-responsive transcription factor isoform X2

      UniProtKB/TrEMBL
      A0AAA9TMP8

    3. XM_059892692.1 → XP_059748675.1  calcium-responsive transcription factor isoform X2

      UniProtKB/TrEMBL
      A0AAA9TMP8
      Related
      ENSBTAP00000098256.1, ENSBTAT00000121733.1

    4. XM_059892700.1 → XP_059748683.1  calcium-responsive transcription factor isoform X3

    5. XM_025000240.2 → XP_024856008.2  calcium-responsive transcription factor isoform X1

    6. XM_025000235.2 → XP_024856003.2  calcium-responsive transcription factor isoform X1

    7. XM_025000231.2 → XP_024855999.2  calcium-responsive transcription factor isoform X1

    8. XM_025000250.2 → XP_024856018.2  calcium-responsive transcription factor isoform X5

    9. XM_025000243.2 → XP_024856011.2  calcium-responsive transcription factor isoform X1

    10. XM_025000249.2 → XP_024856017.2  calcium-responsive transcription factor isoform X1

    11. XM_025000251.2 → XP_024856019.2  calcium-responsive transcription factor isoform X6

      Related
      ENSBTAP00000103918.1, ENSBTAT00000095413.1

    12. XM_025000259.2 → XP_024856027.2  calcium-responsive transcription factor isoform X7

    13. XM_059892710.1 → XP_059748693.1  calcium-responsive transcription factor isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58CW6.1 GenPept UniProtKB/Swiss-Prot:Q58CW6

    Gene LinkOut

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    Research Materials