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    CPNE6 copine 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 508059, updated on 4-Oct-2024

    Summary

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    Official Symbol
    CPNE6provided by VGNC
    Official Full Name
    copine 6provided by VGNC
    Primary source
    VGNC:VGNC:27662
    See related
    BGD:BT24470; Ensembl:ENSBTAG00000001870
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CPNE6 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (21062389..21068992, complement)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene phosphoenolpyruvate carboxykinase 2, mitochondrial Neighboring gene neural retina leucine zipper Neighboring gene capping protein regulator and myosin 1 linker 3 Neighboring gene uncharacterized LOC132346287 Neighboring gene uncharacterized LOC112448390 Neighboring gene dehydrogenase/reductase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137714

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copine-6
    Names
    copine VI (neuronal)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045990.2 → NP_001039455.1  copine-6

      See identical proteins and their annotated locations for NP_001039455.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112841
      UniProtKB/Swiss-Prot
      Q2KHY1
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21062389..21068992 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024997373.2 → XP_024853141.1  copine-6 isoform X1

      UniProtKB/Swiss-Prot
      Q2KHY1
      Related
      ENSBTAT00000002436.6
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine

    2. XM_024997372.2 → XP_024853140.1  copine-6 isoform X1

      UniProtKB/Swiss-Prot
      Q2KHY1
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KHY1.1 GenPept UniProtKB/Swiss-Prot:Q2KHY1

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