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    KDM8 lysine demethylase 8 [ Bos taurus (domestic cattle) ]

    Gene ID: 507905, updated on 4-Oct-2024

    Summary

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    Official Symbol
    KDM8provided by VGNC
    Official Full Name
    lysine demethylase 8provided by VGNC
    Primary source
    VGNC:VGNC:30534
    See related
    BGD:BT26927; Ensembl:ENSBTAG00000019530
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    JMJD5
    Orthologs
    human mouse all
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    Genomic context

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    See KDM8 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (24778527..24800600)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444347 Neighboring gene chromosome 25 C16orf82 homolog Neighboring gene NSE1 homolog, SMC5-SMC6 complex component Neighboring gene transfer RNA histidin (anticodon AUG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • FLJ13798

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional peptidase and arginyl-hydroxylase JMJD5
    Names
    L-arginine (3R)-hydroxylase KDM8
    arginyl C3-hydroxylase KDM8
    jmjC domain-containing protein 5
    jumonji C domain-containing protein 5
    jumonji domain containing 5
    jumonji domain-containing protein 5
    lysine-specific demethylase 8
    NP_001068807.1
    XP_024840512.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075339.1 → NP_001068807.1  bifunctional peptidase and arginyl-hydroxylase JMJD5

      See identical proteins and their annotated locations for NP_001068807.1

      Status: PROVISIONAL

      Source sequence(s)
      BT025493
      UniProtKB/Swiss-Prot
      Q1JP61
      UniProtKB/TrEMBL
      A0AAF6Z716
      Related
      ENSBTAP00000026023.6, ENSBTAT00000026023.7
      Conserved Domains (1) summary
      pfam13621
      Location:189 → 406
      Cupin_8; Cupin-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24778527..24800600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024984744.2 → XP_024840512.1  bifunctional peptidase and arginyl-hydroxylase JMJD5 isoform X1

      UniProtKB/Swiss-Prot
      Q1JP61
      UniProtKB/TrEMBL
      A0AAF6Z716
      Conserved Domains (1) summary
      pfam13621
      Location:189 → 406
      Cupin_8; Cupin-like domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1JP61.1 GenPept UniProtKB/Swiss-Prot:Q1JP61

    Gene LinkOut

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