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    GTF2IRD1 GTF2I repeat domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 507792, updated on 10-Oct-2024

    Summary

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    Official Symbol
    GTF2IRD1provided by VGNC
    Official Full Name
    GTF2I repeat domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:29700
    See related
    BGD:BT21716; Ensembl:ENSBTAG00000006212
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GTF2IRD1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (32905071..33023036, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIi Neighboring gene uncharacterized LOC132343869 Neighboring gene microRNA mir-2387 Neighboring gene CAP-Gly domain containing linker protein 2 Neighboring gene uncharacterized LOC107131856

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of the interface between cGMP-dependent protein kinase Ibeta and its interaction partners TFII-I and IRAG reveals a common interaction motif. Casteel DE, et al. J Biol Chem, 2005 Nov 18. PMID 16166082
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. cGMP-dependent protein kinase Ibeta binds to TFII-I and IRAG through a common interaction motif
      Title: Identification of the interface between cGMP-dependent protein kinase Ibeta and its interaction partners TFII-I and IRAG reveals a common interaction motif.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor II-I repeat domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191468.3 → NP_001178397.2  general transcription factor II-I repeat domain-containing protein 1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000025
      UniProtKB/TrEMBL
      E1BN85
      Conserved Domains (1) summary
      pfam02946
      Location:802 → 874
      GTF2I; GTF2I-like repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      32905071..33023036 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024984741.2 → XP_024840509.1  general transcription factor II-I repeat domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      E1BN85
      Conserved Domains (1) summary
      pfam02946
      Location:799 → 871
      GTF2I; GTF2I-like repeat

    2. XM_024984740.2 → XP_024840508.1  general transcription factor II-I repeat domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      E1BN85
      Related
      ENSBTAP00000008161.7, ENSBTAT00000008161.7
      Conserved Domains (1) summary
      pfam02946
      Location:780 → 852
      GTF2I; GTF2I-like repeat

    3. XM_024984738.2 → XP_024840506.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      E1BN85
      Conserved Domains (1) summary
      pfam02946
      Location:799 → 871
      GTF2I; GTF2I-like repeat

    4. XM_059881224.1 → XP_059737207.1  general transcription factor II-I repeat domain-containing protein 1 isoform X5

    5. XM_024984739.2 → XP_024840507.1  general transcription factor II-I repeat domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      E1BN85
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    6. XM_059881223.1 → XP_059737206.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

    7. XM_059881221.1 → XP_059737204.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

    8. XM_059881222.1 → XP_059737205.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

    9. XM_010819509.4 → XP_010817811.2  general transcription factor II-I repeat domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      E1BN85
      Conserved Domains (1) summary
      pfam02946
      Location:728 → 800
      GTF2I; GTF2I-like repeat

    10. XM_059881225.1 → XP_059737208.1  general transcription factor II-I repeat domain-containing protein 1 isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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