APOBEC3Z1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A [Bos taurus (domestic cattle)] - Gene

Summary

Gene symbol: APOBEC3Z1
Gene description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
See related: BGD:BT28076; Ensembl:ENSBTAG00000037800
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as: APOBEC3A
Annotation information: Annotation category: partial on reference assembly
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2023_09	current	ARS-UCD2.0 (GCF_002263795.3)	5	NC_037332.1 (110531271..110534617)

Chromosome 5 - NC_037332.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables cytidine deaminase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA cytosine deamination	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cytidine to uridine editing	IEA Inferred from Electronic Annotation more info	PubMed
involved_in defense response to virus	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in P-body	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: probable DNA dC->dU-editing enzyme APOBEC-3A

Names: apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 3*Z1*

NP_001157408.1

EC 3.5.4.-

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001163936.1 → NP_001157408.1 probable DNA dC->dU-editing enzyme APOBEC-3A

See identical proteins and their annotated locations for NP_001157408.1

Status: PROVISIONAL

Source sequence(s)

EU864534

UniProtKB/TrEMBL

B7T153, F1ML73

Related

ENSBTAP00000010196.5, ENSBTAT00000010196.6

Conserved Domains (3) summary

cd01283
Location:18 → 99

cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...

pfam05240
Location:122 → 165

APOBEC_C; APOBEC-like C-terminal domain

pfam08210
Location:6 → 177

APOBEC_N; APOBEC-like N-terminal domain