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    NUP50 nucleoporin 50 [ Bos taurus (domestic cattle) ]

    Gene ID: 506836, updated on 4-Oct-2024

    Summary

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    Official Symbol
    NUP50provided by VGNC
    Official Full Name
    nucleoporin 50provided by VGNC
    Primary source
    VGNC:VGNC:32362
    See related
    BGD:BT18303; Ensembl:ENSBTAG00000017652
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NUP50 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (115588183..115610180)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA11 Neighboring gene uncharacterized LOC132345371 Neighboring gene KIAA0930 Neighboring gene microRNA mir-1249 Neighboring gene uncharacterized LOC107132530

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134469

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein Nup50
    Names
    nucleoporin 50kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038048.2 → NP_001033137.1  nuclear pore complex protein Nup50

      See identical proteins and their annotated locations for NP_001033137.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109804
      UniProtKB/TrEMBL
      A0AAA9TU20, Q32L21
      Related
      ENSBTAP00000023480.4, ENSBTAT00000023480.5
      Conserved Domains (2) summary
      cd13170
      Location:347 → 463
      RanBD_NUP50; Nucleoporin 50 Ran-binding domain
      pfam08911
      Location:3 → 49
      NUP50; NUP50 (Nucleoporin 50 kDa)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      115588183..115610180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024991494.2 → XP_024847262.1  nuclear pore complex protein Nup50 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TU20, F1MZD9
      Conserved Domains (2) summary
      cd13170
      Location:347 → 463
      RanBD_NUP50; Nucleoporin 50 Ran-binding domain
      pfam08911
      Location:3 → 49
      NUP50; NUP50 (Nucleoporin 50 kDa)
    Nucleotide Protein Strain
    Heading Accession and Version

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