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    SF3A1 splicing factor 3a subunit 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 504381, updated on 10-Oct-2024

    Summary

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    Official Symbol
    SF3A1provided by VGNC
    Official Full Name
    splicing factor 3a subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:34506
    See related
    BGD:BT10681; Ensembl:ENSBTAG00000003390
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SF3A1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (69345110..69364407, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene cytosolic arginine sensor for mTORC1 subunit 1 Neighboring gene TBC1 domain family member 10A Neighboring gene coiled-coil domain containing 157 Neighboring gene ring finger protein 215

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC143002

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 3A subunit 1
    Names
    splicing factor 3 subunit 1
    splicing factor 3a, subunit 1, 120kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081510.1 → NP_001074979.1  splicing factor 3A subunit 1

      See identical proteins and their annotated locations for NP_001074979.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133328
      UniProtKB/Swiss-Prot
      A2VDN6
      UniProtKB/TrEMBL
      A0AAF6YL61
      Related
      ENSBTAP00000077850.1, ENSBTAT00000090840.1
      Conserved Domains (5) summary
      cd01800
      Location:718 → 793
      SF3a120_C; Ubiquitin-like domain of Mammalian splicing factor SF3a_120
      smart00648
      Location:50 → 103
      SWAP; Suppressor-of-White-APricot splicing regulator
      smart00213
      Location:718 → 786
      UBQ; Ubiquitin homologues
      pfam01805
      Location:165 → 215
      Surp; Surp module
      pfam12230
      Location:229 → 471
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      69345110..69364407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875892.1 → XP_059731875.1  splicing factor 3A subunit 1 isoform X1

      UniProtKB/Swiss-Prot
      A2VDN6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VDN6.1 GenPept UniProtKB/Swiss-Prot:A2VDN6

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