SLC30A1 solute carrier family 30 member 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: SLC30A1provided by VGNC
Official Full Name: solute carrier family 30 member 1provided by VGNC
Primary source: VGNC:VGNC:93055
See related: Ensembl:ENSSSCG00000039472
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: ZnT-1
Expression: Ubiquitous expression in liver (RPKM 20.5), lung (RPKM 14.4) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	9	NC_010451.4 (131633586..131636934)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	9	NC_010451.3 (144671051..144677621)

Chromosome 9 - NC_010451.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH102049 (e-PCR)
- UniSTS:96383

MARC_17913-17914:1025020546:1 (e-PCR)
- UniSTS:268440

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium channel inhibitor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in detoxification of zinc ion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in intracellular zinc ion homeostasis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in zinc ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info	PubMed
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: proton-coupled zinc antiporter SLC30A1

Names: solute carrier family 30 (zinc transporter), member 1; zinc transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001139470.1 → NP_001132942.1 proton-coupled zinc antiporter SLC30A1

See identical proteins and their annotated locations for NP_001132942.1

Status: PROVISIONAL

Source sequence(s)

FJ374262

UniProtKB/TrEMBL

A0A4X1TIE8, A0A8D0PB70, B6VCB0

Related

ENSSSCP00000057971.1, ENSSSCT00000057077.3

Conserved Domains (2) summary

COG1230
Location:6 → 422

CzcD; Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

pfam01545
Location:21 → 140

Cation_efflux; Cation efflux family