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    Dnaaf9 dynein axonemal assembly factor 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499891, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Dnaaf9provided by RGD
    Official Full Name
    dynein axonemal assembly factor 9provided by RGD
    Primary source
    RGD:1565616
    See related
    EnsemblRapid:ENSRNOG00000021237 AllianceGenome:RGD:1565616
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565616
    Summary
    Orthologous to human DNAAF9 (dynein axonemal assembly factor 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 147.3), Brain (RPKM 143.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Dnaaf9 in Genome Data Viewer
    Location:
    3q36
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (138370971..138505711, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (117918047..118052641, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (123243873..123376458, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene inosine triphosphatase Neighboring gene solute carrier family 4 member 11 Neighboring gene RNA, U6 small nuclear 45 Neighboring gene U6 spliceosomal RNA Neighboring gene glutathione S-transferase alpha 4, pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    dynein axonemal assembly factor 9
    Names
    uncharacterized protein C20orf194 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109206.1 → NP_001102676.1  dynein axonemal assembly factor 9

      See identical proteins and their annotated locations for NP_001102676.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473949
      UniProtKB/TrEMBL
      A0A8I6AF68, A6HQB0, D3ZVN5
      Related
      ENSRNOP00000028842.5, ENSRNOT00000028842.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      138370971..138505711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039105694.2 → XP_038961622.1  dynein axonemal assembly factor 9 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AF68
      Related
      ENSRNOP00000110298.1, ENSRNOT00000137335.1

    2. XM_017591986.3 → XP_017447475.3  dynein axonemal assembly factor 9 isoform X2

    3. XM_063284380.1 → XP_063140450.1  dynein axonemal assembly factor 9 isoform X4

    4. XM_063284379.1 → XP_063140449.1  dynein axonemal assembly factor 9 isoform X3

    5. XM_039105696.2 → XP_038961624.2  dynein axonemal assembly factor 9 isoform X5

    6. XM_039105698.2 → XP_038961626.2  dynein axonemal assembly factor 9 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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