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    serinc1 serine incorporator 1, gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496872, updated on 17-Aug-2024

    Summary

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    Official Symbol
    serinc1provided by Xenbase
    Official Full Name
    serine incorporator 1, gene 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-954990
    See related
    Ensembl:ENSXETG00000023292
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    tde2; tde1l; tms-2; serinc1-a; serinc1-b; serinc1.1
    Orthologs
    human mouse all
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    Genomic context

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    See serinc1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (65352004..65363892, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (68109423..68121312, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene heat shock factor 2, gene 2 Neighboring gene heat shock transcription factor 2 Neighboring gene protein kinase (cAMP-dependent, catalytic) inhibitor beta Neighboring gene sphingomyelin phosphodiesterase acid-like 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine incorporator 1
    Names
    tumor differentially expressed 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011399.1 → NP_001011399.1  serine incorporator 1 precursor

      See identical proteins and their annotated locations for NP_001011399.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088606
      UniProtKB/TrEMBL
      A0A6I8Q9C4, A0A803KGZ5
      Related
      ENSXETP00000066150.1, ENSXETT00000100269.2
      Conserved Domains (1) summary
      pfam03348
      Location:16 → 458
      Serinc; Serine incorporator (Serinc)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      65352004..65363892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018093869.2 → XP_017949358.1  serine incorporator 1 isoform X1

      UniProtKB/TrEMBL
      A0A5S6KEC2, A0A6I8RKU1, A0A6I8SNX6
      Related
      ENSXETP00000085469.2, ENSXETT00000074198.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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