U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ccn5 cellular communication network factor 5 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496678, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ccn5provided by Xenbase
    Official Full Name
    cellular communication network factor 5provided by Xenbase
    Primary source
    Xenbase:XB-GENE-876336
    See related
    Ensembl:ENSXETG00000027362
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ct58; ctgf; wisp2; ctgf-l
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ccn5 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (37904396..37912301, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (29624437..29632007, complement)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene P2Y purinoceptor 1 Neighboring gene P2Y purinoceptor 1 Neighboring gene adenosine deaminase Neighboring gene adenosine deaminase, gene 2 Neighboring gene protein kinase (cAMP-dependent, catalytic) inhibitor gamma

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables heparin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables integrin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CCN family member 5; WNT1-inducible-signaling pathway protein 2
    Names
    WNT1 inducible signaling pathway protein 2
    connective tissue growth factor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011237.1 → NP_001011237.1  CCN family member 5 precursor

      See identical proteins and their annotated locations for NP_001011237.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087808
      UniProtKB/TrEMBL
      A0A6I8PVV9, Q5M8V9
      Related
      ENSXETP00000057102.4, ENSXETT00000057102.4
      Conserved Domains (2) summary
      smart00214
      Location:98 → 157
      VWC; von Willebrand factor (vWF) type C domain
      pfam00219
      Location:22 → 68
      IGFBP; Insulin-like growth factor binding protein

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      37904396..37912301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031894057.1 → XP_031749917.1  WNT1-inducible-signaling pathway protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8J1IWE7
      Conserved Domains (3) summary
      smart00214
      Location:164 → 223
      VWC; von Willebrand factor (vWF) type C domain
      pfam00219
      Location:88 → 138
      IGFBP; Insulin-like growth factor binding protein
      pfam19035
      Location:256 → 299
      TSP1_CCN; CCN3 Nov like TSP1 domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.