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    clec10a C-type lectin domain family 10 member A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496661, updated on 17-Aug-2024

    Summary

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    Official Symbol
    clec10aprovided by Xenbase
    Official Full Name
    C-type lectin domain family 10 member Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-947983
    See related
    Ensembl:ENSXETG00000001177
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    asgr2
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    Genomic context

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    See clec10a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (151806778..151815656)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683767.1 (30274..38675, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene asialoglycoprotein receptor 2 Neighboring gene asialoglycoprotein receptor 2-like Neighboring gene tyrosine kinase, non-receptor, 2 like Neighboring gene phospholipid scramblase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin domain family 10 member A
    Names
    asialoglycoprotein receptor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011225.1 → NP_001011225.1  C-type lectin domain family 10 member A

      See identical proteins and their annotated locations for NP_001011225.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087789
      UniProtKB/TrEMBL
      A0A1B8XYJ2, A0A803KKN8, F6UT03, Q5M8X8
      Related
      ENSXETP00000002555.5, ENSXETT00000002555.5
      Conserved Domains (2) summary
      cd03590
      Location:128 → 253
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:47 → 92
      Lectin_N; Hepatic lectin, N-terminal domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      151806778..151815656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960234.3 → XP_012815688.1  C-type lectin domain family 10 member A isoform X2

      UniProtKB/TrEMBL
      A0A1B8XYG1, A0A1B8XYJ2, F6UT03, Q5M8X8
      Conserved Domains (3) summary
      cd03590
      Location:203 → 328
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      COG3883
      Location:100 → 195
      CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
      pfam03954
      Location:71 → 116
      Lectin_N; Hepatic lectin, N-terminal domain

    2. XM_012960232.2 → XP_012815686.1  C-type lectin domain family 10 member A isoform X1

      UniProtKB/TrEMBL
      A0A1B8XYJ2, A0A803KE24, F6UT03, Q5M8X8
      Related
      ENSXETP00000118676.1, ENSXETT00000111520.1
      Conserved Domains (3) summary
      cd03590
      Location:211 → 336
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:79 → 124
      Lectin_N; Hepatic lectin, N-terminal domain
      pfam15237
      Location:136 → 204
      PTRF_SDPR; PTRF/SDPR family

    3. XM_012960235.2 → XP_012815689.1  C-type lectin domain family 10 member A isoform X4

      UniProtKB/TrEMBL
      A0A1B8XYJ2, A0A8J0SK15, F6UT03, Q5M8X8
      Related
      ENSXETP00000107001.1, ENSXETT00000115539.1
      Conserved Domains (2) summary
      cd03590
      Location:160 → 285
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:79 → 124
      Lectin_N; Hepatic lectin, N-terminal domain

    4. XM_031897887.1 → XP_031753747.1  C-type lectin domain family 10 member A isoform X3

      UniProtKB/TrEMBL
      A0A1B8XYJ2, A0A8J1J7A1, F6UT03, Q5M8X8
      Conserved Domains (2) summary
      cd03590
      Location:174 → 299
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      COG3883
      Location:71 → 166
      CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]

    5. XM_012960236.3 → XP_012815690.1  C-type lectin domain family 10 member A isoform X5

      UniProtKB/TrEMBL
      A0A8J0SH50
      Conserved Domains (2) summary
      cd03590
      Location:105 → 230
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam15237
      Location:30 → 98
      PTRF_SDPR; PTRF/SDPR family
    Nucleotide Protein Strain
    Heading Accession and Version

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