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    nol12 nucleolar protein 12 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 493530, updated on 17-Aug-2024

    Summary

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    Official Symbol
    nol12provided by Xenbase
    Official Full Name
    nucleolar protein 12provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1011565
    See related
    Ensembl:ENSXETG00000015984
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    nop25
    Orthologs
    human mouse all
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    Genomic context

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    See nol12 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (122631433..122641979, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (112220948..112233653, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108647343 Neighboring gene TRIO and F-actin-binding protein-like Neighboring gene ArfGAP with dual PH domains 1 like Neighboring gene urotensin-2 receptor-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC88868

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nucleolar protein 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008167.1 → NP_001008168.1  nucleolar protein 12

      See identical proteins and their annotated locations for NP_001008168.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082486
      UniProtKB/Swiss-Prot
      Q640V3
      UniProtKB/TrEMBL
      A0A6I8Q3P8, A0A8J1JFV9
      Conserved Domains (1) summary
      pfam09805
      Location:5 → 85
      Nop25; Nucleolar protein 12 (25kDa)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      122631433..122641979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031900041.1 → XP_031755901.1  nucleolar protein 12 isoform X2

      UniProtKB/TrEMBL
      A0A6I8Q3P8, A0A8J1JGW8
      Related
      ENSXETP00000034873.4, ENSXETT00000034873.4
      Conserved Domains (1) summary
      pfam09805
      Location:5 → 85
      Nop25; Nucleolar protein 12 (25kDa)

    2. XM_031900040.1 → XP_031755900.1  nucleolar protein 12 isoform X1

      UniProtKB/Swiss-Prot
      Q640V3
      UniProtKB/TrEMBL
      A0A6I8Q3P8, A0A8J1JFV9
      Conserved Domains (1) summary
      pfam09805
      Location:5 → 85
      Nop25; Nucleolar protein 12 (25kDa)

    3. XM_031900039.1 → XP_031755899.1  nucleolar protein 12 isoform X1

      UniProtKB/Swiss-Prot
      Q640V3
      UniProtKB/TrEMBL
      A0A6I8Q3P8, A0A8J1JFV9
      Conserved Domains (1) summary
      pfam09805
      Location:5 → 85
      Nop25; Nucleolar protein 12 (25kDa)

    4. XM_031900038.1 → XP_031755898.1  nucleolar protein 12 isoform X1

      UniProtKB/Swiss-Prot
      Q640V3
      UniProtKB/TrEMBL
      A0A6I8Q3P8, A0A8J1JFV9
      Related
      ENSXETP00000064227.2, ENSXETT00000091559.2
      Conserved Domains (1) summary
      pfam09805
      Location:5 → 85
      Nop25; Nucleolar protein 12 (25kDa)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q640V3.1 GenPept UniProtKB/Swiss-Prot:Q640V3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.