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    SURF4 surfeit 4 [ Canis lupus familiaris (dog) ]

    Gene ID: 491269, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SURF4provided by VGNC
    Official Full Name
    surfeit 4provided by VGNC
    Primary source
    VGNC:VGNC:46996
    See related
    Ensembl:ENSCAFG00845010041
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SURF4 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (50669979..50681072, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (49077425..49088503, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (49851901..49862981, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (49432410..49443469, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (49773905..49784941, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD36 Neighboring gene ribosomal protein L7a Neighboring gene SURF1 cytochrome c oxidase assembly factor Neighboring gene surfeit 2 Neighboring gene serine/threonine kinase like domain containing 1 Neighboring gene REX4 homolog, 3'-5' exonuclease Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    surfeit locus protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      50669979..50681072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038678085.1 → XP_038534013.1  surfeit locus protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JIG3, A0A8C0RV37, A0A8I3N8T4, A0A8P0PG52
      Related
      ENSCAFP00845013752.1, ENSCAFT00845017662.1
      Conserved Domains (1) summary
      pfam02077
      Location:4 → 269
      SURF4; SURF4 family

    2. XM_038678086.1 → XP_038534014.1  surfeit locus protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8I3N8T4, A0A8P0PG52
      Conserved Domains (1) summary
      cl21527
      Location:1 → 226
      DoxX

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      49432410..49443469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038486983.1 → XP_038342911.1  surfeit locus protein 4 isoform X1

      Conserved Domains (1) summary
      pfam02077
      Location:4 → 269
      SURF4; SURF4 family

    2. XM_038486984.1 → XP_038342912.1  surfeit locus protein 4 isoform X2

      Conserved Domains (1) summary
      cl21527
      Location:1 → 226
      DoxX

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      49773905..49784941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038612787.1 → XP_038468715.1  surfeit locus protein 4 isoform X1

      Conserved Domains (1) summary
      pfam02077
      Location:4 → 269
      SURF4; SURF4 family

    2. XM_038612788.1 → XP_038468716.1  surfeit locus protein 4 isoform X2

      Conserved Domains (1) summary
      cl21527
      Location:1 → 226
      DoxX

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      49851901..49862981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038548831.1 → XP_038404759.1  surfeit locus protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JIG3, A0A8C0RV37, A0A8I3N8T4, A0A8P0PG52
      Conserved Domains (1) summary
      pfam02077
      Location:4 → 269
      SURF4; SURF4 family

    2. XM_038548832.1 → XP_038404760.1  surfeit locus protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8I3N8T4, A0A8P0PG52
      Conserved Domains (1) summary
      cl21527
      Location:1 → 226
      DoxX

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      49077425..49088503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038615492.1 → XP_038471420.1  surfeit locus protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JIG3, A0A8C0RV37, A0A8I3N8T4, A0A8P0PG52
      Conserved Domains (1) summary
      pfam02077
      Location:4 → 269
      SURF4; SURF4 family

    2. XM_005625146.4 → XP_005625203.1  surfeit locus protein 4 isoform X2

      See identical proteins and their annotated locations for XP_005625203.1

      UniProtKB/TrEMBL
      A0A8I3N8T4, A0A8P0PG52
      Conserved Domains (1) summary
      cl21527
      Location:1 → 226
      DoxX
    Nucleotide Protein
    Heading Accession and Version

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