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    GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 491117, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GDPD1provided by VGNC
    Official Full Name
    glycerophosphodiester phosphodiesterase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:49766
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See GDPD1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (34578122..34631947)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (33006339..33060078)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (33739617..33793383)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (33363858..33417560)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (33652876..33706611)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102152320 Neighboring gene proline rich 11 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene uncharacterized LOC111095101 Neighboring gene yippee like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysophospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-acylethanolamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerophosphodiester phosphodiesterase domain-containing protein 1; lysophospholipase D GDPD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      34578122..34631947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038677152.1 → XP_038533080.1  lysophospholipase D GDPD1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PNB5, A0A8C0Q406
      Conserved Domains (1) summary
      cd08612
      Location:14 → 311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    2. XM_038677153.1 → XP_038533081.1  lysophospholipase D GDPD1 isoform X2

      Conserved Domains (1) summary
      cd08612
      Location:1 → 255
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RNA

    1. XR_005432372.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      33363858..33417560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038486127.1 → XP_038342055.1  lysophospholipase D GDPD1 isoform X1

      Conserved Domains (1) summary
      cd08612
      Location:14 → 311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    2. XM_038486128.1 → XP_038342056.1  lysophospholipase D GDPD1 isoform X2

      Conserved Domains (1) summary
      cd08612
      Location:1 → 255
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RNA

    1. XR_005330912.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      33652876..33706611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611912.1 → XP_038467840.1  lysophospholipase D GDPD1 isoform X1

      Conserved Domains (1) summary
      cd08612
      Location:14 → 311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    2. XM_038611913.1 → XP_038467841.1  lysophospholipase D GDPD1 isoform X2

      Conserved Domains (1) summary
      cd08612
      Location:1 → 255
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RNA

    1. XR_005399042.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      33739617..33793383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547948.1 → XP_038403876.1  lysophospholipase D GDPD1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PNB5, A0A8C0Q406
      Conserved Domains (1) summary
      cd08612
      Location:14 → 311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    2. XM_038547949.1 → XP_038403877.1  lysophospholipase D GDPD1 isoform X2

      Conserved Domains (1) summary
      cd08612
      Location:1 → 255
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RNA

    1. XR_005364606.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      33006339..33060078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_548237.7 → XP_548237.3  lysophospholipase D GDPD1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PNB5, A0A8C0Q406
      Conserved Domains (1) summary
      cd08612
      Location:14 → 311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    2. XM_005624747.4 → XP_005624804.1  lysophospholipase D GDPD1 isoform X2

      Conserved Domains (1) summary
      cd08612
      Location:1 → 255
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RNA

    1. XR_002630046.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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