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    SNF8 SNF8 subunit of ESCRT-II [ Canis lupus familiaris (dog) ]

    Gene ID: 491063, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNF8provided by VGNC
    Official Full Name
    SNF8 subunit of ESCRT-IIprovided by VGNC
    Primary source
    VGNC:VGNC:46601
    See related
    Ensembl:ENSCAFG00845010455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SNF8 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (25947254..25957310, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (24613162..24623187, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (25102284..25112314, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (24715090..24725126, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (24973356..24983364, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene ATP synthase membrane subunit c locus 1 Neighboring gene ubiquitin conjugating enzyme E2 Z Neighboring gene gastric inhibitory polypeptide Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT II complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar-sorting protein SNF8
    Names
    SNF8, ESCRT-II complex subunit, homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      25947254..25957310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038676775.1 → XP_038532703.1  vacuolar-sorting protein SNF8 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LBP2, A0A8C0Q6Q7, A0A8C0QL44, A0A8I3N5T7, A0A8I3RVU1
      Related
      ENSCAFP00845014383.1, ENSCAFT00845018421.1
      Conserved Domains (1) summary
      pfam04157
      Location:6 → 225
      EAP30; EAP30/Vps36 family

    2. XM_038676776.1 → XP_038532704.1  vacuolar-sorting protein SNF8 isoform X2

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 213
      EAP30; EAP30/Vps36 family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      24715090..24725126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485825.1 → XP_038341753.1  vacuolar-sorting protein SNF8 isoform X1

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 225
      EAP30; EAP30/Vps36 family

    2. XM_038485826.1 → XP_038341754.1  vacuolar-sorting protein SNF8 isoform X2

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 213
      EAP30; EAP30/Vps36 family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      24973356..24983364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611578.1 → XP_038467506.1  vacuolar-sorting protein SNF8 isoform X1

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 225
      EAP30; EAP30/Vps36 family

    2. XM_038611579.1 → XP_038467507.1  vacuolar-sorting protein SNF8 isoform X2

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 213
      EAP30; EAP30/Vps36 family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      25102284..25112314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547603.1 → XP_038403531.1  vacuolar-sorting protein SNF8 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LBP2, A0A8C0Q6Q7, A0A8C0QL44, A0A8I3N5T7, A0A8I3RVU1
      Conserved Domains (1) summary
      pfam04157
      Location:6 → 225
      EAP30; EAP30/Vps36 family

    2. XM_038547604.1 → XP_038403532.1  vacuolar-sorting protein SNF8 isoform X2

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 213
      EAP30; EAP30/Vps36 family

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      24613162..24623187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_548183.7 → XP_548183.2  vacuolar-sorting protein SNF8 isoform X1

      See identical proteins and their annotated locations for XP_548183.2

      UniProtKB/TrEMBL
      A0A8C0LBP2, A0A8C0Q6Q7, A0A8C0QL44, A0A8I3N5T7, A0A8I3RVU1
      Conserved Domains (1) summary
      pfam04157
      Location:6 → 225
      EAP30; EAP30/Vps36 family

    2. XM_022423077.2 → XP_022278785.1  vacuolar-sorting protein SNF8 isoform X2

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 213
      EAP30; EAP30/Vps36 family
    Nucleotide Protein
    Heading Accession and Version

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