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    HOXB1 homeobox B1 [ Canis lupus familiaris (dog) ]

    Gene ID: 491052, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HOXB1provided by VGNC
    Official Full Name
    homeobox B1provided by VGNC
    Primary source
    VGNC:VGNC:41749
    See related
    Ensembl:ENSCAFG00845017096
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See HOXB1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (25586553..25590090, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (24256127..24259664, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (24743539..24747076, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (24354782..24358319, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (24615222..24618759, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like Neighboring gene uncharacterized LOC102155920 Neighboring gene uncharacterized LOC111097369 Neighboring gene uncharacterized LOC102156194 Neighboring gene homeobox B2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      25586553..25590090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038675210.1 → XP_038531138.1  homeobox protein Hox-B1

      UniProtKB/TrEMBL
      A0A8C0LXB6, A0A8I3NSF6
      Related
      ENSCAFP00845023726.1, ENSCAFT00845030255.1
      Conserved Domains (1) summary
      pfam00046
      Location:211 → 264
      Homeobox; Homeobox domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      24354782..24358319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038487620.1 → XP_038343548.1  homeobox protein Hox-B1

      Conserved Domains (1) summary
      pfam00046
      Location:211 → 264
      Homeobox; Homeobox domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      24615222..24618759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038610145.1 → XP_038466073.1  homeobox protein Hox-B1

      Conserved Domains (1) summary
      pfam00046
      Location:211 → 264
      Homeobox; Homeobox domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      24743539..24747076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038546141.1 → XP_038402069.1  homeobox protein Hox-B1

      UniProtKB/TrEMBL
      A0A8C0LXB6, A0A8I3NSF6
      Conserved Domains (1) summary
      pfam00046
      Location:211 → 264
      Homeobox; Homeobox domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      24256127..24259664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_548172.6 → XP_548172.3  homeobox protein Hox-B1

      UniProtKB/TrEMBL
      A0A8C0LXB6, A0A8I3NSF6
      Conserved Domains (1) summary
      pfam00046
      Location:211 → 264
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials