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    PSMD3 proteasome 26S subunit, non-ATPase 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 491018, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PSMD3provided by VGNC
    Official Full Name
    proteasome 26S subunit, non-ATPase 3provided by VGNC
    Primary source
    VGNC:VGNC:45112
    See related
    Ensembl:ENSCAFG00845010417
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PSMD3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (23330997..23345916, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (22010317..22025182, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (22488121..22502997, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (22104354..22119263, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (22363560..22378432, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 24 Neighboring gene small nucleolar RNA SNORD124 Neighboring gene colony stimulating factor 3 Neighboring gene uncharacterized LOC111097357 Neighboring gene gasdermin A Neighboring gene leucine rich repeat containing 3C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, lid subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 3
    Names
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      23330997..23345916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038676582.1 → XP_038532510.1  26S proteasome non-ATPase regulatory subunit 3

      UniProtKB/TrEMBL
      A0A8C0L350, A0A8C0NBP8, A0A8C0PP61, A0A8I3NH42
      Related
      ENSCAFP00845014318.1, ENSCAFT00845018343.1
      Conserved Domains (2) summary
      pfam01399
      Location:358 → 462
      PCI; PCI domain
      pfam08375
      Location:465 → 523
      Rpn3_C; Proteasome regulatory subunit C-terminal

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      22104354..22119263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485638.1 → XP_038341566.1  26S proteasome non-ATPase regulatory subunit 3

      Conserved Domains (2) summary
      pfam01399
      Location:358 → 462
      PCI; PCI domain
      pfam08375
      Location:465 → 523
      Rpn3_C; Proteasome regulatory subunit C-terminal

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      22363560..22378432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611388.1 → XP_038467316.1  26S proteasome non-ATPase regulatory subunit 3

      Conserved Domains (2) summary
      pfam01399
      Location:358 → 462
      PCI; PCI domain
      pfam08375
      Location:465 → 523
      Rpn3_C; Proteasome regulatory subunit C-terminal

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      22488121..22502997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547405.1 → XP_038403333.1  26S proteasome non-ATPase regulatory subunit 3

      UniProtKB/TrEMBL
      A0A8C0L350, A0A8C0NBP8, A0A8C0PP61, A0A8I3NH42
      Conserved Domains (2) summary
      pfam01399
      Location:358 → 462
      PCI; PCI domain
      pfam08375
      Location:465 → 523
      Rpn3_C; Proteasome regulatory subunit C-terminal

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      22010317..22025182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_548138.7 → XP_548138.2  26S proteasome non-ATPase regulatory subunit 3

      UniProtKB/TrEMBL
      A0A8C0L350, A0A8C0NBP8, A0A8C0PP61, A0A8I3NH42
      Conserved Domains (2) summary
      pfam01399
      Location:358 → 462
      PCI; PCI domain
      pfam08375
      Location:465 → 523
      Rpn3_C; Proteasome regulatory subunit C-terminal
    Nucleotide Protein
    Heading Accession and Version

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