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    VRTN vertebrae development associated [ Canis lupus familiaris (dog) ]

    Gene ID: 490782, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VRTNprovided by VGNC
    Official Full Name
    vertebrae development associatedprovided by VGNC
    Primary source
    VGNC:VGNC:48305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See VRTN in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (47764122..47773650)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (47221284..47230754)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (47841642..47851102)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (47433026..47442487)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (47454368..47463856)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene visual system homeobox 2 Neighboring gene ATP binding cassette subfamily D member 4 Neighboring gene synapse differentiation inducing 1 like Neighboring gene NPC intracellular cholesterol transporter 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vertnin; LOW QUALITY PROTEIN: vertnin
    Names
    vertebrae development homolog (pig)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      47764122..47773650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038672971.1 → XP_038528899.1  LOW QUALITY PROTEIN: vertnin

      UniProtKB/TrEMBL
      A0A8P0NIA7
      Conserved Domains (2) summary
      PHA03247
      Location:404 → 612
      PHA03247; large tegument protein UL36; Provisional
      NF033516
      Location:271 → 350
      transpos_IS3; IS3 family transposase

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      47433026..47442487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038484472.1 → XP_038340400.1  vertnin

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      47454368..47463856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608171.1 → XP_038464099.1  vertnin

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      47841642..47851102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544047.1 → XP_038399975.1  vertnin

      UniProtKB/TrEMBL
      A0A8C0QUL9, A0A8P0NIA7

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      47221284..47230754
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022422491.2 → XP_022278199.1  vertnin

      UniProtKB/TrEMBL
      A0A8C0QUL9, A0A8P0NIA7
      Conserved Domains (2) summary
      cl21459
      Location:272 → 303
      HTH; Helix-turn-helix domains
      cl26464
      Location:404 → 627
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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