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    LMOD1 leiomodin 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 490237, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LMOD1provided by VGNC
    Official Full Name
    leiomodin 1provided by VGNC
    Primary source
    VGNC:VGNC:53619
    See related
    Ensembl:ENSCAFG00845016513
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LMOD1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (1032621..1067903)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (1076436..1111697)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (1152832..1188079)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (1020621..1055864)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (1128814..1164077)

    Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 17A Neighboring gene 60S ribosomal protein L17-like Neighboring gene uncharacterized LOC111096581 Neighboring gene uncharacterized LOC111096582 Neighboring gene uncharacterized LOC119872477 Neighboring gene shisa family member 4 Neighboring gene uncharacterized LOC119872476 Neighboring gene importin 9 Neighboring gene uncharacterized protein C8orf58-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in myofibril assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pointed-end actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in myofibril IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in striated muscle thin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leiomodin-1
    Names
    leiomodin 1 (smooth muscle)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051811.1 Reference ROS_Cfam_1.0

      Range
      1032621..1067903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038670735.1 → XP_038526663.1  leiomodin-1

      UniProtKB/TrEMBL
      A0A8C0KUL3, A0A8C0R9Q9, A0A8I3P086
      Related
      ENSCAFP00845023021.1, ENSCAFT00845029273.1
      Conserved Domains (3) summary
      PTZ00121
      Location:75 → 291
      PTZ00121; MAEBL; Provisional
      pfam03250
      Location:13 → 86
      Tropomodulin
      cl39015
      Location:312 → 429
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049267.1 Alternate UMICH_Zoey_3.1

      Range
      1020621..1055864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038480572.1 → XP_038336500.1  leiomodin-1

      Conserved Domains (3) summary
      PTZ00121
      Location:75 → 291
      PTZ00121; MAEBL; Provisional
      pfam03250
      Location:13 → 86
      Tropomodulin
      cl39015
      Location:312 → 429
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

      Range
      1128814..1164077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038606031.1 → XP_038461959.1  leiomodin-1

      Conserved Domains (3) summary
      PTZ00121
      Location:75 → 291
      PTZ00121; MAEBL; Provisional
      pfam03250
      Location:13 → 86
      Tropomodulin
      cl39015
      Location:312 → 429
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

      Range
      1152832..1188079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038541898.1 → XP_038397826.1  leiomodin-1

      UniProtKB/TrEMBL
      A0A8C0KUL3, A0A8C0R9Q9, A0A8I3P086
      Conserved Domains (3) summary
      PTZ00121
      Location:75 → 291
      PTZ00121; MAEBL; Provisional
      pfam03250
      Location:13 → 86
      Tropomodulin
      cl39015
      Location:312 → 429
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      1076436..1111697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038560718.1 → XP_038416646.1  leiomodin-1

      UniProtKB/TrEMBL
      A0A8C0KUL3, A0A8C0R9Q9, A0A8I3P086
      Conserved Domains (3) summary
      PTZ00121
      Location:75 → 291
      PTZ00121; MAEBL; Provisional
      pfam03250
      Location:13 → 86
      Tropomodulin
      cl39015
      Location:312 → 429
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
    Heading Accession and Version

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