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    RCC1 regulator of chromosome condensation 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 487332, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RCC1provided by VGNC
    Official Full Name
    regulator of chromosome condensation 1provided by VGNC
    Primary source
    VGNC:VGNC:45440
    See related
    Ensembl:ENSCAFG00845010088
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See RCC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (72507102..72531854, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (68524663..68540842, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (71341326..71357632, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (69335321..69351510, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (70343443..70359626, complement)

    Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD99 Neighboring gene uncharacterized LOC610012 Neighboring gene tRNA selenocysteine 1 associated protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC111093268 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene small nucleolar RNA host gene 3 (non-protein coding)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of chromosome condensation

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205212.2 → NP_001192141.1  regulator of chromosome condensation

      Status: VALIDATED

      Source sequence(s)
      JAAUVH010000373
      UniProtKB/TrEMBL
      A0A8C0LHB9, A0A8C0MNF7, A0A8C0R6M0, A0A8I3N902
      Related
      ENSCAFP00845013838.1, ENSCAFT00845017764.1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051806.1 Reference ROS_Cfam_1.0

      Range
      72507102..72531854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038657823.1 → XP_038513751.1  regulator of chromosome condensation isoform X2

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Conserved Domains (1) summary
      COG5184
      Location:44 → 462
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    2. XM_038657818.1 → XP_038513746.1  regulator of chromosome condensation isoform X1

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Conserved Domains (1) summary
      COG5184
      Location:62 → 478
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    3. XM_038657821.1 → XP_038513749.1  regulator of chromosome condensation isoform X1

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Conserved Domains (1) summary
      COG5184
      Location:62 → 478
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    4. XM_038657820.1 → XP_038513748.1  regulator of chromosome condensation isoform X1

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Related
      ENSCAFP00845013814.1, ENSCAFT00845017737.1
      Conserved Domains (1) summary
      COG5184
      Location:62 → 478
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    5. XM_038657822.1 → XP_038513750.1  regulator of chromosome condensation isoform X1

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Conserved Domains (1) summary
      COG5184
      Location:62 → 478
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    6. XM_038657824.1 → XP_038513752.1  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Conserved Domains (1) summary
      COG5184
      Location:18 → 434
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    7. XM_038657825.1 → XP_038513753.1  regulator of chromosome condensation isoform X4

      UniProtKB/TrEMBL
      A0A8C0LHB9, A0A8C0MNF7, A0A8C0R6M0, A0A8I3N902
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    8. XM_038657827.1 → XP_038513755.1  regulator of chromosome condensation isoform X6

      UniProtKB/TrEMBL
      A0A8C0LHB9
      Related
      ENSCAFP00845013930.1, ENSCAFT00845017884.1
      Conserved Domains (1) summary
      COG5184
      Location:4 → 364
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    9. XM_038657826.1 → XP_038513754.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      A0A8I3NQE7, A0A8P0SRD9
      Conserved Domains (1) summary
      COG5184
      Location:13 → 406
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049262.1 Alternate UMICH_Zoey_3.1

      Range
      69335321..69351510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

      Range
      70343443..70359626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

      Range
      71341326..71357632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      68524663..68540842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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