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    SLC13A3 solute carrier family 13 member 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 485910, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC13A3provided by VGNC
    Official Full Name
    solute carrier family 13 member 3provided by VGNC
    Primary source
    VGNC:VGNC:46229
    See related
    Ensembl:ENSCAFG00845019431
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SLC13A3 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 24 NC_051828.1 (34518068..34593024, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 24 NC_006606.4 (33269702..33344444, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 24 NC_049245.1 (34430790..34505677, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 24 NC_049284.1 (33775187..33849803, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 24 NC_049765.1 (33891902..33966700, complement)

    Chromosome 24 - NC_051828.1Genomic Context describing neighboring genes Neighboring gene thyrotropin-releasing hormone receptor-like Neighboring gene osteoclast stimulatory transmembrane protein Neighboring gene TP53 regulating kinase Neighboring gene solute carrier family 2 member 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables citrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium:dicarboxylate symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables succinate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in citrate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic anion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 13 member 3; LOW QUALITY PROTEIN: solute carrier family 13 member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051828.1 Reference ROS_Cfam_1.0

      Range
      34518068..34593024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038434014.1 → XP_038289942.1  solute carrier family 13 member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QC03, A0A8I3P9M2, A0A8P0SFH8
      Related
      ENSCAFP00845026885.1, ENSCAFT00845034343.1
      Conserved Domains (1) summary
      cd01115
      Location:42 → 557
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    2. XM_038434015.1 → XP_038289943.1  solute carrier family 13 member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KPP1
      Conserved Domains (1) summary
      cd01115
      Location:1 → 510
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049284.1 Alternate UMICH_Zoey_3.1

      Range
      33775187..33849803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038509173.1 → XP_038365101.1  LOW QUALITY PROTEIN: solute carrier family 13 member 3 isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049765.1 Alternate UNSW_CanFamBas_1.0

      Range
      33891902..33966700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038636779.1 → XP_038492707.1  solute carrier family 13 member 3 isoform X1

    2. XM_038636780.1 → XP_038492708.1  solute carrier family 13 member 3 isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049245.1 Alternate UU_Cfam_GSD_1.0

      Range
      34430790..34505677 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038572506.1 → XP_038428434.1  solute carrier family 13 member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QC03, A0A8I3P9M2, A0A8P0SFH8
      Conserved Domains (1) summary
      cd01115
      Location:42 → 557
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    2. XM_038572507.1 → XP_038428435.1  solute carrier family 13 member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KPP1
      Conserved Domains (1) summary
      cd01115
      Location:1 → 510
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      33269702..33344444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_543034.6 → XP_543034.2  solute carrier family 13 member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QC03, A0A8I3P9M2, A0A8P0SFH8
      Conserved Domains (1) summary
      cd01115
      Location:42 → 557
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

    2. XM_022408841.2 → XP_022264549.1  solute carrier family 13 member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KPP1
      Conserved Domains (1) summary
      cd01115
      Location:1 → 510
      SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
    Nucleotide Protein
    Heading Accession and Version

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