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    CHST2 carbohydrate sulfotransferase 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 485701, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHST2provided by VGNC
    Official Full Name
    carbohydrate sulfotransferase 2provided by VGNC
    Primary source
    VGNC:VGNC:39254
    See related
    Ensembl:ENSCAFG00845029239
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CHST2 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (39227491..39231375)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (38621314..38625198)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (39230215..39234094)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (38910900..38914781)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (38991867..38995743)

    Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a-like Neighboring gene uncharacterized LOC102151264 Neighboring gene U2 snRNP associated SURP domain containing Neighboring gene proline-rich protein 32-like Neighboring gene solute carrier family 9 member A9 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-acetylglucosamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sulfur compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbohydrate sulfotransferase 2; LOW QUALITY PROTEIN: carbohydrate sulfotransferase 2
    XP_038288505.1
    XP_038313239.1
    XP_038363809.1
    XP_038427050.1
    XP_038491241.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051827.1 Reference ROS_Cfam_1.0

      Range
      39227491..39231375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038432577.1 → XP_038288505.1  carbohydrate sulfotransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QCW0, A0A8I3Q2N8
      Related
      ENSCAFP00845040586.1, ENSCAFT00845051728.1
      Conserved Domains (1) summary
      cl21551
      Location:332 → 528
      Sulfotransfer_3; Sulfotransferase family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049283.1 Alternate UMICH_Zoey_3.1

      Range
      38910900..38914781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038507881.1 → XP_038363809.1  carbohydrate sulfotransferase 2 isoform X1

      Conserved Domains (1) summary
      cl21551
      Location:331 → 527
      Sulfotransfer_3; Sulfotransferase family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

      Range
      38991867..38995743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038635313.1 → XP_038491241.1  LOW QUALITY PROTEIN: carbohydrate sulfotransferase 2 isoform X1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

      Range
      39230215..39234094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038571122.1 → XP_038427050.1  LOW QUALITY PROTEIN: carbohydrate sulfotransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QCW0

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      38621314..38625198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038457311.1 → XP_038313239.1  LOW QUALITY PROTEIN: carbohydrate sulfotransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8P0TPY7
      Conserved Domains (1) summary
      cl21551
      Location:310 → 506
      Sulfotransfer_3; Sulfotransferase family
    Nucleotide Protein
    Heading Accession and Version

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