U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ICAM5 intercellular adhesion molecule 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 484958, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ICAM5provided by VGNC
    Official Full Name
    intercellular adhesion molecule 5provided by VGNC
    Primary source
    VGNC:VGNC:41857
    See related
    Ensembl:ENSCAFG00845027874
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ICAM5 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (51330697..51337648, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (50678819..50685773, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (51206727..51213680, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (50536837..50543787, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (50965597..50972542, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene ferredoxin 2 Neighboring gene zinc finger GATA like protein 1 Neighboring gene uncharacterized LOC119864748 Neighboring gene intercellular adhesion molecule 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    intercellular adhesion molecule 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      51330697..51337648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038428668.1 → XP_038284596.1  intercellular adhesion molecule 5

      UniProtKB/TrEMBL
      A0A8C0TBF8, A0A8I3PZA9
      Related
      ENSCAFP00845038665.1, ENSCAFT00845049267.1
      Conserved Domains (6) summary
      smart00409
      Location:758 → 829
      IG; Immunoglobulin
      pfam03921
      Location:31 → 103
      ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain
      pfam13895
      Location:324 → 385
      Ig_2; Immunoglobulin domain
      cd00096
      Location:697 → 703
      Ig; Ig strand C [structural motif]
      cd05755
      Location:119 → 219
      IgC2_2_ICAM-1_like; Second immunoglobulin (Ig)-like C2-set domain of intercellular cell adhesion molecule 1 (ICAM-1), and similar domains
      cl11960
      Location:692 → 741
      Ig; Immunoglobulin domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      50536837..50543787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038504311.1 → XP_038360239.1  intercellular adhesion molecule 5

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      50965597..50972542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038631491.1 → XP_038487419.1  intercellular adhesion molecule 5

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      51206727..51213680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038567342.1 → XP_038423270.1  intercellular adhesion molecule 5

      UniProtKB/TrEMBL
      A0A8C0RQ03

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      50678819..50685773 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_542074.6 → XP_542074.2  intercellular adhesion molecule 5

      UniProtKB/TrEMBL
      A0A8C0TBF8, A0A8P0NJD8
      Conserved Domains (6) summary
      cd05755
      Location:120 → 219
      Ig2_ICAM-1_like; Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
      smart00408
      Location:760 → 820
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:758 → 830
      IG_like; Immunoglobulin like
      pfam03921
      Location:31 → 103
      ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain
      pfam13895
      Location:325 → 404
      Ig_2; Immunoglobulin domain
      cl11960
      Location:428 → 480
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials