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    ELL elongation factor for RNA polymerase II [ Canis lupus familiaris (dog) ]

    Gene ID: 484820, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ELLprovided by VGNC
    Official Full Name
    elongation factor for RNA polymerase IIprovided by VGNC
    Primary source
    VGNC:VGNC:40306
    See related
    Ensembl:ENSCAFG00845021270
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ELL in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (44998786..45078146)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (44427274..44506570)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (44921745..45001009)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (44236144..44315451)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (44646294..44725583)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene KxDL motif containing 1 Neighboring gene FKBP prolyl isomerase 8 Neighboring gene uncharacterized LOC102153688 Neighboring gene uncharacterized LOC119864712 Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene single stranded DNA binding protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase II elongation factor ELL

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      44998786..45078146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038428138.1 → XP_038284066.1  RNA polymerase II elongation factor ELL isoform X2

      UniProtKB/TrEMBL
      A0A8C0TN50, A0A8I3S513
      Conserved Domains (3) summary
      PHA03247
      Location:265 → 481
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:469 → 570
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:7 → 256
      ELL; RNA polymerase II elongation factor ELL

    2. XM_038428137.1 → XP_038284065.1  RNA polymerase II elongation factor ELL isoform X1

      UniProtKB/TrEMBL
      A0A8C0KGP7, A0A8C0TN50, A0A8I3S513
      Related
      ENSCAFP00845029736.1, ENSCAFT00845037945.1
      Conserved Domains (3) summary
      PHA03247
      Location:301 → 517
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:505 → 606
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:6 → 292
      ELL; RNA polymerase II elongation factor ELL

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      44236144..44315451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038503795.1 → XP_038359723.1  RNA polymerase II elongation factor ELL isoform X2

      Conserved Domains (3) summary
      PHA03247
      Location:265 → 481
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:469 → 570
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:7 → 256
      ELL; RNA polymerase II elongation factor ELL

    2. XM_038503794.1 → XP_038359722.1  RNA polymerase II elongation factor ELL isoform X1

      Conserved Domains (3) summary
      PHA03247
      Location:301 → 517
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:505 → 606
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:6 → 292
      ELL; RNA polymerase II elongation factor ELL

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      44646294..44725583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038630961.1 → XP_038486889.1  RNA polymerase II elongation factor ELL isoform X2

      Conserved Domains (3) summary
      PHA03247
      Location:265 → 481
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:469 → 570
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:7 → 256
      ELL; RNA polymerase II elongation factor ELL

    2. XM_038630960.1 → XP_038486888.1  RNA polymerase II elongation factor ELL isoform X1

      Conserved Domains (3) summary
      PHA03247
      Location:301 → 517
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:505 → 606
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:6 → 292
      ELL; RNA polymerase II elongation factor ELL

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      44921745..45001009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038566807.1 → XP_038422735.1  RNA polymerase II elongation factor ELL isoform X2

      UniProtKB/TrEMBL
      A0A8C0TN50, A0A8I3S513
      Conserved Domains (3) summary
      PHA03247
      Location:265 → 481
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:469 → 570
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:7 → 256
      ELL; RNA polymerase II elongation factor ELL

    2. XM_038566806.1 → XP_038422734.1  RNA polymerase II elongation factor ELL isoform X1

      UniProtKB/TrEMBL
      A0A8C0KGP7, A0A8C0TN50, A0A8I3S513
      Conserved Domains (3) summary
      PHA03247
      Location:301 → 517
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:505 → 606
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:6 → 292
      ELL; RNA polymerase II elongation factor ELL

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      44427274..44506570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005632688.4 → XP_005632745.1  RNA polymerase II elongation factor ELL isoform X2

      UniProtKB/TrEMBL
      A0A8C0TN50, A0A8I3S513
      Conserved Domains (3) summary
      PHA03247
      Location:265 → 481
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:469 → 570
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:7 → 256
      ELL; RNA polymerase II elongation factor ELL

    2. XM_541936.6 → XP_541936.2  RNA polymerase II elongation factor ELL isoform X1

      UniProtKB/TrEMBL
      A0A8C0KGP7, A0A8C0TN50, A0A8I3S513
      Conserved Domains (3) summary
      PHA03247
      Location:301 → 517
      PHA03247; large tegument protein UL36; Provisional
      pfam07303
      Location:505 → 606
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:6 → 292
      ELL; RNA polymerase II elongation factor ELL
    Nucleotide Protein
    Heading Accession and Version

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