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    CLIP3 CAP-Gly domain containing linker protein 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 484566, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLIP3provided by VGNC
    Official Full Name
    CAP-Gly domain containing linker protein 3provided by VGNC
    Primary source
    VGNC:VGNC:39344
    See related
    Ensembl:ENSCAFG00845000488
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CLIP3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (117260885..117273887)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (116063388..116076437)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (117503650..117516694)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (116824923..116837922)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (116448500..116461488)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 62 Neighboring gene uncharacterized LOC119869627 Neighboring gene THAP domain containing 8 Neighboring gene uncharacterized LOC111090541 Neighboring gene alkB homolog 6 Neighboring gene spectrin repeat containing nuclear envelope family member 4 Neighboring gene succinate dehydrogenase complex assembly factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule plus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule plus-end IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CAP-Gly domain-containing linker protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      117260885..117273887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038657323.1 → XP_038513251.1  CAP-Gly domain-containing linker protein 3

      UniProtKB/TrEMBL
      A0A8C0R367, A0A8C0Z2B2, A0A8I3MAX2, A0A8I3MKR0, A0A8P0TL01
      Related
      ENSCAFP00845000587.1, ENSCAFT00845000790.1
      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      116824923..116837922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038468444.1 → XP_038324372.1  CAP-Gly domain-containing linker protein 3

      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      116448500..116461488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038593481.1 → XP_038449409.1  CAP-Gly domain-containing linker protein 3

      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      117503650..117516694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038529218.1 → XP_038385146.1  CAP-Gly domain-containing linker protein 3

      UniProtKB/TrEMBL
      A0A8C0R367, A0A8C0Z2B2, A0A8I3MAX2, A0A8I3MKR0, A0A8P0TL01
      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      116063388..116076437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_541680.7 → XP_541680.3  CAP-Gly domain-containing linker protein 3

      See identical proteins and their annotated locations for XP_541680.3

      UniProtKB/TrEMBL
      A0A8C0R367, A0A8C0Z2B2, A0A8I3MAX2, A0A8I3MKR0, A0A8P0TL01
      Conserved Domains (3) summary
      sd00045
      Location:120 → 157
      ANK; ANK repeat [structural motif]
      pfam01302
      Location:418 → 482
      CAP_GLY; CAP-Gly domain
      pfam12796
      Location:122 → 228
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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