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    TCF21 transcription factor 21 [ Canis lupus familiaris (dog) ]

    Gene ID: 483993, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TCF21provided by VGNC
    Official Full Name
    transcription factor 21provided by VGNC
    Primary source
    VGNC:VGNC:47193
    See related
    Ensembl:ENSCAFG00845004920
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    POD1
    Orthologs
    human mouse all
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    Genomic context

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    See TCF21 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (27014669..27017873)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (27737867..27741067)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (27087943..27091143)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (26898755..26901959)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (26778392..26781591)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene basic salivary proline-rich protein 4-like Neighboring gene uncharacterized LOC119881371 Neighboring gene solute carrier family 2 member 12 Neighboring gene TATA-box binding protein like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor 21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      27014669..27017873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038654174.1 → XP_038510102.1  transcription factor 21

      UniProtKB/TrEMBL
      A0A8C0LBT7, A0A8C0M9I4, A0A8I3NA71
      Related
      ENSCAFP00845006939.1, ENSCAFT00845008802.1
      Conserved Domains (1) summary
      cd19704
      Location:77 → 140
      bHLH_TS_TCF21_capsulin; basic helix-loop-helix (bHLH) domain found in transcription factor 21 (TCF-21) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      26898755..26901959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038465439.1 → XP_038321367.1  transcription factor 21

      Conserved Domains (1) summary
      cd19704
      Location:77 → 140
      bHLH_TS_TCF21_capsulin; basic helix-loop-helix (bHLH) domain found in transcription factor 21 (TCF-21) and similar proteins

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      26778392..26781591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038590350.1 → XP_038446278.1  transcription factor 21

      Conserved Domains (1) summary
      cd19704
      Location:77 → 140
      bHLH_TS_TCF21_capsulin; basic helix-loop-helix (bHLH) domain found in transcription factor 21 (TCF-21) and similar proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      27087943..27091143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038526056.1 → XP_038381984.1  transcription factor 21

      UniProtKB/TrEMBL
      A0A8C0LBT7, A0A8C0M9I4, A0A8I3NA71
      Conserved Domains (1) summary
      cd19704
      Location:77 → 140
      bHLH_TS_TCF21_capsulin; basic helix-loop-helix (bHLH) domain found in transcription factor 21 (TCF-21) and similar proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      27737867..27741067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_541110.7 → XP_541110.3  transcription factor 21

      See identical proteins and their annotated locations for XP_541110.3

      UniProtKB/TrEMBL
      A0A8C0LBT7, A0A8C0M9I4, A0A8I3NA71
      Conserved Domains (1) summary
      cd19704
      Location:77 → 140
      bHLH_TS_TCF21_capsulin; basic helix-loop-helix (bHLH) domain found in transcription factor 21 (TCF-21) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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