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    CNTNAP5 contactin associated protein family member 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 483874, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CNTNAP5provided by VGNC
    Official Full Name
    contactin associated protein family member 5provided by VGNC
    Primary source
    VGNC:VGNC:39440
    See related
    Ensembl:ENSCAFG00845024893
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    caspr5
    Orthologs
    human mouse all
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    Genomic context

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    See CNTNAP5 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 19 NC_051823.1 (26949560..27744211, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 19 NC_006601.4 (25851036..26645832, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 19 NC_049240.1 (27008968..27794876, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 19 NC_049279.1 (25649632..26437876, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 19 NC_049760.1 (25839343..26628380, complement)

    Chromosome 19 - NC_051823.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1-like Neighboring gene protein disulfide-isomerase A3-like Neighboring gene elongation factor 1-alpha 1-like Neighboring gene uncharacterized LOC119864470 Neighboring gene uncharacterized LOC102155172 Neighboring gene uncharacterized LOC111091136 Neighboring gene heat shock cognate 71 kDa protein-like Neighboring gene RNA-binding protein EWS-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. New members of the neurexin superfamily: multiple rodent homologues of the human CASPR5 gene. Traut W, et al. Mamm Genome, 2006 Jul. PMID 16845472
    2. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Lindblad-Toh K, et al. Nature, 2005 Dec 8. PMID 16341006

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    contactin-associated protein-like 5
    Names
    cell recognition molecule Caspr5
    contactin associated protein like 5
    contactin-associated protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001048108.1 → NP_001041573.1  contactin-associated protein-like 5 precursor

      See identical proteins and their annotated locations for NP_001041573.1

      Status: PROVISIONAL

      Source sequence(s)
      BN000917
      UniProtKB/Swiss-Prot
      Q0V8T0
      UniProtKB/TrEMBL
      A0A8P0T9B5
      Related
      ENSCAFP00845034450.1, ENSCAFT00845043962.1
      Conserved Domains (6) summary
      smart00231
      Location:30 → 174
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
      cd00054
      Location:960 → 995
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00057
      Location:34 → 173
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
      cd00110
      Location:792 → 936
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00008
      Location:550 → 581
      EGF; EGF-like domain
      pfam02210
      Location:209 → 338
      Laminin_G_2; Laminin G domain

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051823.1 Reference ROS_Cfam_1.0

      Range
      26949560..27744211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038425577.1 → XP_038281505.1  contactin-associated protein-like 5 isoform X1

      UniProtKB/TrEMBL
      A0A8I3S938, A0A8P0T9B5
      Related
      ENSCAFP00845034657.1, ENSCAFT00845044222.1
      Conserved Domains (5) summary
      cd00054
      Location:961 → 996
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00057
      Location:34 → 173
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
      cd00110
      Location:793 → 937
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00008
      Location:551 → 582
      EGF; EGF-like domain
      pfam02210
      Location:209 → 338
      Laminin_G_2; Laminin G domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049279.1 Alternate UMICH_Zoey_3.1

      Range
      25649632..26437876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049760.1 Alternate UNSW_CanFamBas_1.0

      Range
      25839343..26628380 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049240.1 Alternate UU_Cfam_GSD_1.0

      Range
      27008968..27794876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006601.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      25851036..26645832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0V8T0.1 GenPept UniProtKB/Swiss-Prot:Q0V8T0

    Gene LinkOut

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    Research Materials