U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SYVN1 synoviolin 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 483746, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SYVN1provided by VGNC
    Official Full Name
    synoviolin 1provided by VGNC
    Primary source
    VGNC:VGNC:47055
    See related
    Ensembl:ENSCAFG00845025988
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SYVN1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (53102565..53110749)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (50668558..50676741)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (52566393..52574578)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (52197954..52206134)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (51771728..51779906)

    Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 20 Neighboring gene calpain 1 Neighboring gene speedy/RINGO cell cycle regulator family member C Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene zinc finger HIT-type containing 2 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase synoviolin
    XP_013976491.1
    XP_013976492.1
    XP_013976493.1
    XP_013976494.1
    XP_013976496.1
    XP_038280967.1
    XP_038280968.1
    XP_038280969.1
    XP_038280970.1
    XP_038280971.1
    XP_038280972.1
    XP_038280973.1
    XP_038309744.1
    XP_038309745.1
    XP_038357231.1
    XP_038357232.1
    XP_038357233.1
    XP_038357234.1
    XP_038357235.1
    XP_038357236.1
    XP_038357237.1
    XP_038419908.1
    XP_038419909.1
    XP_038419910.1
    XP_038419911.1
    XP_038419912.1
    XP_038419913.1
    XP_038419914.1
    XP_038484038.1
    XP_038484039.1
    XP_038484040.1
    XP_038484041.1
    XP_038484042.1
    XP_038484043.1
    XP_038484044.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051822.1 Reference ROS_Cfam_1.0

      Range
      53102565..53110749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038425045.1 → XP_038280973.1  E3 ubiquitin-protein ligase synoviolin isoform X7

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    2. XM_038425044.1 → XP_038280972.1  E3 ubiquitin-protein ligase synoviolin isoform X6

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    3. XM_038425043.1 → XP_038280971.1  E3 ubiquitin-protein ligase synoviolin isoform X5

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    4. XM_038425041.1 → XP_038280969.1  E3 ubiquitin-protein ligase synoviolin isoform X3

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    5. XM_038425039.1 → XP_038280967.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    6. XM_038425042.1 → XP_038280970.1  E3 ubiquitin-protein ligase synoviolin isoform X4

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Related
      ENSCAFP00845036141.1, ENSCAFT00845046033.1
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    7. XM_038425040.1 → XP_038280968.1  E3 ubiquitin-protein ligase synoviolin isoform X2

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:65 → 388
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049278.1 Alternate UMICH_Zoey_3.1

      Range
      52197954..52206134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038501309.1 → XP_038357237.1  E3 ubiquitin-protein ligase synoviolin isoform X7

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    2. XM_038501308.1 → XP_038357236.1  E3 ubiquitin-protein ligase synoviolin isoform X6

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    3. XM_038501307.1 → XP_038357235.1  E3 ubiquitin-protein ligase synoviolin isoform X5

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    4. XM_038501305.1 → XP_038357233.1  E3 ubiquitin-protein ligase synoviolin isoform X3

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    5. XM_038501303.1 → XP_038357231.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    6. XM_038501306.1 → XP_038357234.1  E3 ubiquitin-protein ligase synoviolin isoform X4

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    7. XM_038501304.1 → XP_038357232.1  E3 ubiquitin-protein ligase synoviolin isoform X2

      Conserved Domains (1) summary
      COG5243
      Location:65 → 388
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

      Range
      51771728..51779906
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038628116.1 → XP_038484044.1  E3 ubiquitin-protein ligase synoviolin isoform X7

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    2. XM_038628115.1 → XP_038484043.1  E3 ubiquitin-protein ligase synoviolin isoform X6

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    3. XM_038628114.1 → XP_038484042.1  E3 ubiquitin-protein ligase synoviolin isoform X5

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    4. XM_038628112.1 → XP_038484040.1  E3 ubiquitin-protein ligase synoviolin isoform X3

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    5. XM_038628110.1 → XP_038484038.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    6. XM_038628113.1 → XP_038484041.1  E3 ubiquitin-protein ligase synoviolin isoform X4

      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    7. XM_038628111.1 → XP_038484039.1  E3 ubiquitin-protein ligase synoviolin isoform X2

      Conserved Domains (1) summary
      COG5243
      Location:65 → 388
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

      Range
      52566393..52574578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038563986.1 → XP_038419914.1  E3 ubiquitin-protein ligase synoviolin isoform X7

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    2. XM_038563985.1 → XP_038419913.1  E3 ubiquitin-protein ligase synoviolin isoform X6

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    3. XM_038563984.1 → XP_038419912.1  E3 ubiquitin-protein ligase synoviolin isoform X5

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    4. XM_038563982.1 → XP_038419910.1  E3 ubiquitin-protein ligase synoviolin isoform X3

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    5. XM_038563980.1 → XP_038419908.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    6. XM_038563983.1 → XP_038419911.1  E3 ubiquitin-protein ligase synoviolin isoform X4

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    7. XM_038563981.1 → XP_038419909.1  E3 ubiquitin-protein ligase synoviolin isoform X2

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:65 → 388
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      50668558..50676741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038453817.1 → XP_038309745.1  E3 ubiquitin-protein ligase synoviolin isoform X7

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    2. XM_038453816.1 → XP_038309744.1  E3 ubiquitin-protein ligase synoviolin isoform X6

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    3. XM_014121019.3 → XP_013976494.1  E3 ubiquitin-protein ligase synoviolin isoform X5

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    4. XM_014121017.3 → XP_013976492.1  E3 ubiquitin-protein ligase synoviolin isoform X3

      UniProtKB/TrEMBL
      A0A8C0MVI2
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    5. XM_014121021.3 → XP_013976496.1  E3 ubiquitin-protein ligase synoviolin isoform X1

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    6. XM_014121018.3 → XP_013976493.1  E3 ubiquitin-protein ligase synoviolin isoform X4

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:66 → 389
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

    7. XM_014121016.3 → XP_013976491.1  E3 ubiquitin-protein ligase synoviolin isoform X2

      UniProtKB/TrEMBL
      A0A8C0KQB2, A0A8C0TBB3
      Conserved Domains (1) summary
      COG5243
      Location:65 → 388
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials