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    TRPM5 transient receptor potential cation channel subfamily M member 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 483668, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRPM5provided by VGNC
    Official Full Name
    transient receptor potential cation channel subfamily M member 5provided by VGNC
    Primary source
    VGNC:VGNC:47876
    See related
    Ensembl:ENSCAFG00845011524
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TRPM5 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (47158489..47172841, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (45088553..45102905, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (46934044..46948396, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (46606399..46620664, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (46187007..46201359, complement)

    Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene CD81 molecule Neighboring gene tumor suppressing subtransferable candidate 4 Neighboring gene potassium voltage-gated channel subfamily Q member 1 Neighboring gene uncharacterized LOC119864243 Neighboring gene microRNA mir-8859a Neighboring gene microRNA mir-8859b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ligand-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily M member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051822.1 Reference ROS_Cfam_1.0

      Range
      47158489..47172841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038424702.1 → XP_038280630.1  transient receptor potential cation channel subfamily M member 5

      UniProtKB/TrEMBL
      A0A8C0KZ01
      Related
      ENSCAFP00845016035.1, ENSCAFT00845020454.1
      Conserved Domains (2) summary
      TIGR00870
      Location:725 → 1054
      trp; transient-receptor-potential calcium channel protein
      cl39032
      Location:39 → 264
      LSDAT_euk; SLOG in TRPM

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049278.1 Alternate UMICH_Zoey_3.1

      Range
      46606399..46620664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038500922.1 → XP_038356850.1  transient receptor potential cation channel subfamily M member 5

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

      Range
      46187007..46201359 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038627709.1 → XP_038483637.1  transient receptor potential cation channel subfamily M member 5

      Conserved Domains (2) summary
      TIGR00870
      Location:725 → 1054
      trp; transient-receptor-potential calcium channel protein
      cl39032
      Location:39 → 264
      LSDAT_euk; SLOG in TRPM

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

      Range
      46934044..46948396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038563589.1 → XP_038419517.1  transient receptor potential cation channel subfamily M member 5

      UniProtKB/TrEMBL
      A0A8C0KZ01

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      45088553..45102905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022405530.2 → XP_022261238.1  transient receptor potential cation channel subfamily M member 5

      UniProtKB/TrEMBL
      A0A8C0KZ01
      Conserved Domains (2) summary
      TIGR00870
      Location:725 → 1054
      trp; transient-receptor-potential calcium channel protein
      cl39032
      Location:39 → 264
      LSDAT_euk; SLOG in TRPM
    Nucleotide Protein
    Heading Accession and Version

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