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    ELK3 ETS transcription factor ELK3 [ Canis lupus familiaris (dog) ]

    Gene ID: 482613, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ELK3provided by VGNC
    Official Full Name
    ETS transcription factor ELK3provided by VGNC
    Primary source
    VGNC:VGNC:40304
    See related
    Ensembl:ENSCAFG00845025317
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ELK3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (36616449..36680834)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (36336857..36401032)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (36246490..36311229)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (35888292..35952734)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (35983301..36047655)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102152760 Neighboring gene uncharacterized LOC111090047 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene cyclin dependent kinase 17 Neighboring gene 60S ribosomal protein L38-like Neighboring gene ribosomal protein S6 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETS domain-containing protein Elk-3
    Names
    ELK3, ETS transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      36616449..36680834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038688290.1 → XP_038544218.1  ETS domain-containing protein Elk-3 isoform X2

      UniProtKB/TrEMBL
      A0A8I3PXR3, A0A8P0THH1
      Related
      ENSCAFP00845034996.1, ENSCAFT00845044664.1
      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    2. XM_038688289.1 → XP_038544217.1  ETS domain-containing protein Elk-3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LBH6, A0A8C0RZ25, A0A8I3PXT8
      Related
      ENSCAFP00845035044.1, ENSCAFT00845044724.1
      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      35888292..35952734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038496320.1 → XP_038352248.1  ETS domain-containing protein Elk-3 isoform X2

      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    2. XM_038496319.1 → XP_038352247.1  ETS domain-containing protein Elk-3 isoform X1

      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      35983301..36047655
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038622620.1 → XP_038478548.1  ETS domain-containing protein Elk-3 isoform X2

      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    2. XM_038622619.1 → XP_038478547.1  ETS domain-containing protein Elk-3 isoform X1

      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      36246490..36311229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038558704.1 → XP_038414632.1  ETS domain-containing protein Elk-3 isoform X2

      UniProtKB/TrEMBL
      A0A8I3PXR3, A0A8P0THH1
      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    2. XM_038558703.1 → XP_038414631.1  ETS domain-containing protein Elk-3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LBH6, A0A8C0RZ25, A0A8I3PXT8
      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      36336857..36401032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038451684.1 → XP_038307612.1  ETS domain-containing protein Elk-3 isoform X2

      UniProtKB/TrEMBL
      A0A8I3PXR3, A0A8P0THH1
      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain

    2. XM_539730.7 → XP_539730.2  ETS domain-containing protein Elk-3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LBH6, A0A8C0RZ25, A0A8I3PXT8
      Conserved Domains (1) summary
      smart00413
      Location:19 → 88
      ETS; erythroblast transformation specific domain
    Nucleotide Protein
    Heading Accession and Version

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