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    HOXA5 homeobox A5 [ Canis lupus familiaris (dog) ]

    Gene ID: 482370, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HOXA5provided by VGNC
    Official Full Name
    homeobox A5provided by VGNC
    Primary source
    VGNC:VGNC:54769
    See related
    Ensembl:ENSCAFG00845011359
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (40253687..40258302, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (39746469..39750543, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (40411943..40416018, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (40368242..40372352, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (40053309..40057416, complement)

    Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC119866382 Neighboring gene homeobox A4 Neighboring gene uncharacterized LOC119866379 Neighboring gene homeobox A6 Neighboring gene homeobox A7 Neighboring gene homeobox A9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051818.1 Reference ROS_Cfam_1.0

      Range
      40253687..40258302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038686784.1 → XP_038542712.1  homeobox protein Hox-A5

      UniProtKB/TrEMBL
      A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
      Related
      ENSCAFP00845015776.1, ENSCAFT00845020126.1
      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049274.1 Alternate UMICH_Zoey_3.1

      Range
      40368242..40372352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038494894.1 → XP_038350822.1  homeobox protein Hox-A5

      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    2. XM_038494893.1 → XP_038350821.1  homeobox protein Hox-A5

      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

      Range
      40053309..40057416 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621108.1 → XP_038477036.1  homeobox protein Hox-A5

      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    2. XM_038621107.1 → XP_038477035.1  homeobox protein Hox-A5

      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

      Range
      40411943..40416018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557169.1 → XP_038413097.1  homeobox protein Hox-A5

      UniProtKB/TrEMBL
      A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    2. XM_038557168.1 → XP_038413096.1  homeobox protein Hox-A5

      UniProtKB/TrEMBL
      A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39746469..39750543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038438147.1 → XP_038294075.1  homeobox protein Hox-A5

      UniProtKB/TrEMBL
      A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain

    2. XM_539487.7 → XP_539487.3  homeobox protein Hox-A5

      See identical proteins and their annotated locations for XP_539487.3

      UniProtKB/TrEMBL
      A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
      Conserved Domains (1) summary
      pfam00046
      Location:310 → 363
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials