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    BEST3 bestrophin 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 481158, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BEST3provided by VGNC
    Official Full Name
    bestrophin 3provided by VGNC
    Primary source
    VGNC:VGNC:38436
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See BEST3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (11723752..11747644, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (11531886..11555527, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (11960951..11984816, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (11837553..11861617, complement)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene extensin-like Neighboring gene chaperonin containing TCP1 subunit 2 Neighboring gene leucine rich repeat containing 10 Neighboring gene RAB3A interacting protein Neighboring gene myelin regulatory factor like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bestrophin-3; LOW QUALITY PROTEIN: bestrophin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      11723752..11747644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    2. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      11748299..11761164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038678817.1 → XP_038534745.1  bestrophin-3 isoform X1

      Conserved Domains (2) summary
      PRK07003
      Location:210 → 417
      PRK07003; DNA polymerase III subunit gamma/tau
      cl01544
      Location:2 → 103
      Bestrophin; RFP-TM, chloride channel

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      11615078..11627938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038488101.1 → XP_038344029.1  

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      11837553..11861617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    2. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      11862272..11875136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038613452.1 → XP_038469380.1  LOW QUALITY PROTEIN: bestrophin-3 isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      11960951..11984816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    2. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      11985471..11998336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038549568.1 → XP_038405496.1  bestrophin-3 isoform X1

      Conserved Domains (2) summary
      PRK07003
      Location:210 → 417
      PRK07003; DNA polymerase III subunit gamma/tau
      cl01544
      Location:2 → 103
      Bestrophin; RFP-TM, chloride channel

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      11531886..11555527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    2. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      11556177..11567217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038632233.1 → XP_038488161.1  LOW QUALITY PROTEIN: bestrophin-3 isoform X1

      Conserved Domains (2) summary
      PRK07003
      Location:210 → 416
      PRK07003; DNA polymerase III subunit gamma/tau
      cl01544
      Location:2 → 103
      Bestrophin; RFP-TM, chloride channel
    Nucleotide Protein
    Heading Accession and Version

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