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    GLI1 GLI family zinc finger 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 481126, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GLI1provided by VGNC
    Official Full Name
    GLI family zinc finger 1provided by VGNC
    Primary source
    VGNC:VGNC:41256
    See related
    Ensembl:ENSCAFG00845011836
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See GLI1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (1574108..1585023)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (1628322..1639223)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (1919034..1929946)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (1552194..1563093)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (1793705..1804582)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene inhibin subunit beta C Neighboring gene inhibin subunit beta E Neighboring gene Rho GTPase activating protein 9 Neighboring gene methionyl-tRNA synthetase 1 Neighboring gene DNA damage inducible transcript 3 Neighboring gene methyl-CpG binding domain protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein GLI1; LOW QUALITY PROTEIN: zinc finger protein GLI1
    Names
    glioma-associated oncogene homolog 1 (zinc finger protein)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      1574108..1585023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038679094.1 → XP_038535022.1  zinc finger protein GLI1

      UniProtKB/TrEMBL
      A0A8C0MKR6, A0A8C0SIL4, A0A8I3NLD9
      Related
      ENSCAFP00845016568.1, ENSCAFT00845021074.1
      Conserved Domains (5) summary
      PHA03247
      Location:401 → 845
      PHA03247; large tegument protein UL36; Provisional
      COG5048
      Location:83 → 363
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:296 → 386
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:302 → 324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16159
      Location:235 → 264
      FOXP-CC; FOXP coiled-coil domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      1552194..1563093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038487877.1 → XP_038343805.1  LOW QUALITY PROTEIN: zinc finger protein GLI1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      1793705..1804582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038613734.1 → XP_038469662.1  zinc finger protein GLI1

      Conserved Domains (5) summary
      PHA03247
      Location:401 → 845
      PHA03247; large tegument protein UL36; Provisional
      COG5048
      Location:83 → 363
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:296 → 386
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:302 → 324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16159
      Location:235 → 264
      FOXP-CC; FOXP coiled-coil domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      1919034..1929946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038549772.1 → XP_038405700.1  zinc finger protein GLI1

      UniProtKB/TrEMBL
      A0A8C0MKR6, A0A8C0SIL4, A0A8I3NLD9
      Conserved Domains (5) summary
      PHA03247
      Location:401 → 845
      PHA03247; large tegument protein UL36; Provisional
      COG5048
      Location:83 → 363
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:296 → 386
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:302 → 324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16159
      Location:235 → 264
      FOXP-CC; FOXP coiled-coil domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      1628322..1639223
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_538247.7 → XP_538247.2  zinc finger protein GLI1

      UniProtKB/TrEMBL
      A0A8C0MKR6, A0A8C0SIL4, A0A8I3NLD9
      Conserved Domains (5) summary
      PHA03247
      Location:401 → 845
      PHA03247; large tegument protein UL36; Provisional
      COG5048
      Location:83 → 363
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:296 → 386
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:302 → 324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16159
      Location:235 → 264
      FOXP-CC; FOXP coiled-coil domain
    Nucleotide Protein
    Heading Accession and Version

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