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    VMA21 vacuolar ATPase assembly factor VMA21 [ Canis lupus familiaris (dog) ]

    Gene ID: 481074, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VMA21provided by VGNC
    Official Full Name
    vacuolar ATPase assembly factor VMA21provided by VGNC
    Primary source
    VGNC:VGNC:48270
    See related
    Ensembl:ENSCAFG00845024854 Ensembl:ENSCAFG00845024916
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See VMA21 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (121647624..121723089)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (104810848..104816673)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (120734452..120740277)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (118368631..118374456)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (120851851..120857676)

    Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L29-like Neighboring gene G protein-coupled receptor 50 Neighboring gene U6 spliceosomal RNA Neighboring gene PAS domain containing repressor 1 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar ATPase assembly integral membrane protein VMA21
    Names
    VMA21 vacuolar H+-ATPase homolog
    VMA21, vacuolar ATPase assembly factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252312.1 → NP_001239241.1  vacuolar ATPase assembly integral membrane protein VMA21

      See identical proteins and their annotated locations for NP_001239241.1

      Status: PROVISIONAL

      Source sequence(s)
      JAAUVH010000175
      UniProtKB/TrEMBL
      A0A8C0R6J3, A0A8C0SL72, A0A8I3PIV3
      Related
      ENSCAFP00845034365.1, ENSCAFT00845043854.1
      Conserved Domains (1) summary
      pfam09446
      Location:25 → 88
      VMA21; VMA21-like domain

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051843.1 Reference ROS_Cfam_1.0

      Range
      121647624..121723089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038448845.1 → XP_038304773.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X4

      UniProtKB/TrEMBL
      A0A8C0NHK8, A0A8C0R6H1
      Conserved Domains (1) summary
      pfam09446
      Location:44 → 86
      VMA21; VMA21-like domain

    2. XM_038448841.1 → XP_038304769.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X3

    3. XM_038448843.1 → XP_038304771.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X2

    4. XM_038448844.1 → XP_038304772.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X2

    5. XM_038448842.1 → XP_038304770.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X1

      Related
      ENSCAFT00845043967.1

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049299.1 Alternate UMICH_Zoey_3.1

      Range
      118368631..118374456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

      Range
      120851851..120857676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

      Range
      120734452..120740277
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      104810848..104816673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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