WDR13 WD repeat domain 13 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: WDR13provided by VGNC
Official Full Name: WD repeat domain 13provided by VGNC
Primary source: VGNC:VGNC:48352
See related: Ensembl:ENSCAFG00845025857
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: X

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	X	NC_051843.1 (50252408..50259324, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	X	NC_006621.4 (16195277..16202190)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	X	NC_049260.1 (42024053..42030968)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	X	NC_049299.1 (41941934..41948847)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	X	NC_049780.1 (41930304..41937200)

Chromosome X - NC_051843.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

MARC_26104-26105:1032794768:1 (e-PCR)
- UniSTS:268940

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables promoter-specific chromatin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: WD repeat-containing protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051843.1 Reference ROS_Cfam_1.0

Range

50252408..50259324 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038450157.1 → XP_038306085.1 WD repeat-containing protein 13 isoform X1

Conserved Domains (2) summary

sd00039
Location:129 → 166

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 389

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038450155.1 → XP_038306083.1 WD repeat-containing protein 13 isoform X2

UniProtKB/TrEMBL

A0A8C0L9F9, A0A8C0T8D5, A0A8I3PWI9

Related

ENSCAFP00845035865.1, ENSCAFT00845045704.1

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038450156.1 → XP_038306084.1 WD repeat-containing protein 13 isoform X2

UniProtKB/TrEMBL

A0A8C0L9F9, A0A8C0T8D5, A0A8I3PWI9

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

XR_005309432.1 RNA Sequence

Related

ENSCAFT00845045615.1

Alternate UMICH_Zoey_3.1

Genomic

NC_049299.1 Alternate UMICH_Zoey_3.1

Range

41941934..41948847

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038523391.1 → XP_038379319.1 WD repeat-containing protein 13 isoform X1

Conserved Domains (2) summary

sd00039
Location:129 → 166

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 389

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038523389.1 → XP_038379317.1 WD repeat-containing protein 13 isoform X2

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038523390.1 → XP_038379318.1 WD repeat-containing protein 13 isoform X2

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

XR_005352174.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049780.1 Alternate UNSW_CanFamBas_1.0

Range

41930304..41937200

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038651874.1 → XP_038507802.1 WD repeat-containing protein 13 isoform X2

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038651875.1 → XP_038507803.1 WD repeat-containing protein 13 isoform X2

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049260.1 Alternate UU_Cfam_GSD_1.0

Range

42024053..42030968

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038587360.1 → XP_038443288.1 WD repeat-containing protein 13 isoform X1

Conserved Domains (2) summary

sd00039
Location:129 → 166

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 389

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038587358.1 → XP_038443286.1 WD repeat-containing protein 13 isoform X2

UniProtKB/TrEMBL

A0A8C0L9F9, A0A8C0T8D5, A0A8I3PWI9

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038587359.1 → XP_038443287.1 WD repeat-containing protein 13 isoform X2

UniProtKB/TrEMBL

A0A8C0L9F9, A0A8C0T8D5, A0A8I3PWI9

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

XR_005386267.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

16195277..16202190

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038464424.1 → XP_038320352.1 WD repeat-containing protein 13 isoform X1

Conserved Domains (2) summary

sd00039
Location:129 → 166

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 389

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_538024.6 → XP_538024.2 WD repeat-containing protein 13 isoform X2

UniProtKB/TrEMBL

A0A8C0L9F9, A0A8C0T8D5, A0A8I3PWI9

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038464423.1 → XP_038320351.1 WD repeat-containing protein 13 isoform X2

UniProtKB/TrEMBL

A0A8C0L9F9, A0A8C0T8D5, A0A8I3PWI9

Conserved Domains (2) summary

sd00039
Location:221 → 258

7WD40; WD40 repeat [structural motif]

cl29593
Location:175 → 481

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...