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    SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 480477, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMARCD2provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2provided by VGNC
    Primary source
    VGNC:VGNC:46538
    See related
    Ensembl:ENSCAFG00845020972
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCD2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (13448747..13485204, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (12747367..12783601, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (15102810..15139272)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (12395384..12432000, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (15100320..15136529)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 42 Neighboring gene FtsJ RNA 2'-O-methyltransferase 3 Neighboring gene proteasome 26S subunit, ATPase 5 Neighboring gene intercellular adhesion molecule 5 Neighboring gene growth hormone Neighboring gene CD79b molecule

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      13448747..13485204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038675987.1 → XP_038531915.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LS83, A0A8I3PES9
      Related
      ENSCAFP00845029065.1, ENSCAFT00845037109.1
      Conserved Domains (2) summary
      PHA03201
      Location:61 → 148
      PHA03201; uracil DNA glycosylase; Provisional
      cd17675
      Location:307 → 386
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    2. XM_038675989.1 → XP_038531917.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8I3PA25
      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    3. XM_038675988.1 → XP_038531916.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8I3PA25
      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    4. XM_038675990.1 → XP_038531918.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8I3PA25
      Related
      ENSCAFP00845029136.1, ENSCAFT00845037202.1
      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      12395384..12432000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485147.1 → XP_038341075.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1

    2. XM_038485149.1 → XP_038341077.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

    3. XM_038485148.1 → XP_038341076.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

    4. XM_038485150.1 → XP_038341078.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      15100320..15136529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038610872.1 → XP_038466800.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    2. XM_038610871.1 → XP_038466799.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    3. XM_038610870.1 → XP_038466798.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1

      Conserved Domains (2) summary
      PHA03201
      Location:61 → 148
      PHA03201; uracil DNA glycosylase; Provisional
      cd17675
      Location:307 → 386
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    4. XM_038610873.1 → XP_038466801.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      15102810..15139272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038546902.1 → XP_038402830.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8I3PA25
      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    2. XM_038546901.1 → XP_038402829.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8I3PA25
      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    3. XM_038546900.1 → XP_038402828.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LS83, A0A8I3PES9
      Conserved Domains (2) summary
      PHA03201
      Location:61 → 148
      PHA03201; uracil DNA glycosylase; Provisional
      cd17675
      Location:307 → 386
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    4. XM_038546903.1 → XP_038402831.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8I3PA25
      Conserved Domains (1) summary
      cd17675
      Location:232 → 311
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      12747367..12783601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_845276.6 → XP_850369.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LS83, A0A8C0SXK6, A0A8P0SHK6
      Conserved Domains (2) summary
      COG5531
      Location:230 → 425
      Rsc6; Chromatin remodeling complex protein RSC6, contains SWIB domain [Chromatin structure and dynamics]
      pfam02201
      Location:310 → 381
      SWIB; SWIB/MDM2 domain

    2. XM_022422831.2 → XP_022278539.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8C0T104, A0A8P0P5H7
      Conserved Domains (1) summary
      pfam02201
      Location:235 → 306
      SWIB; SWIB/MDM2 domain

    3. XM_005624251.4 → XP_005624308.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      See identical proteins and their annotated locations for XP_005624308.1

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8C0T104, A0A8P0P5H7
      Conserved Domains (1) summary
      pfam02201
      Location:235 → 306
      SWIB; SWIB/MDM2 domain

    4. XM_005624252.4 → XP_005624309.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      See identical proteins and their annotated locations for XP_005624309.1

      UniProtKB/TrEMBL
      A0A8C0R8K1, A0A8C0T104, A0A8P0P5H7
      Conserved Domains (1) summary
      pfam02201
      Location:235 → 306
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
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