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    IRF6 interferon regulatory factor 6 [ Canis lupus familiaris (dog) ]

    Gene ID: 480015, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IRF6provided by VGNC
    Official Full Name
    interferon regulatory factor 6provided by VGNC
    Primary source
    VGNC:VGNC:42095
    See related
    Ensembl:ENSCAFG00845002898
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See IRF6 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (8148397..8167818, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (8024947..8044365, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (8313202..8332619, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (8078084..8097501, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (8175119..8194534, complement)

    Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene laminin subunit beta 3 Neighboring gene U6 spliceosomal RNA Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 Neighboring gene TRAF3 interacting protein 3 Neighboring gene chromosome 7 C1orf74 homolog Neighboring gene UTP25 small subunit processome component Neighboring gene uncharacterized LOC111096614 Neighboring gene nuclear transport factor 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon regulatory factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051811.1 Reference ROS_Cfam_1.0

      Range
      8148397..8167818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038670901.1 → XP_038526829.1  interferon regulatory factor 6

      UniProtKB/TrEMBL
      A0A8C0KK54, A0A8C0T0U5, A0A8I3MM71
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    2. XM_038670900.1 → XP_038526828.1  interferon regulatory factor 6

      UniProtKB/TrEMBL
      A0A8C0KK54, A0A8C0T0U5, A0A8I3MM71
      Related
      ENSCAFP00845004093.1, ENSCAFT00845005153.1
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049267.1 Alternate UMICH_Zoey_3.1

      Range
      8078084..8097501 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038480727.1 → XP_038336655.1  interferon regulatory factor 6

      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    2. XM_038480726.1 → XP_038336654.1  interferon regulatory factor 6

      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

      Range
      8175119..8194534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038606205.1 → XP_038462133.1  interferon regulatory factor 6

      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    2. XM_038606204.1 → XP_038462132.1  interferon regulatory factor 6

      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

      Range
      8313202..8332619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038542049.1 → XP_038397977.1  interferon regulatory factor 6

      UniProtKB/TrEMBL
      A0A8C0KK54, A0A8C0T0U5, A0A8I3MM71
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    2. XM_038542048.1 → XP_038397976.1  interferon regulatory factor 6

      UniProtKB/TrEMBL
      A0A8C0KK54, A0A8C0T0U5, A0A8I3MM71
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8024947..8044365 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_537138.7 → XP_537138.3  interferon regulatory factor 6

      See identical proteins and their annotated locations for XP_537138.3

      UniProtKB/TrEMBL
      A0A8C0KK54, A0A8C0T0U5, A0A8I3MM71
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3

    2. XM_005622335.4 → XP_005622392.1  interferon regulatory factor 6

      See identical proteins and their annotated locations for XP_005622392.1

      UniProtKB/TrEMBL
      A0A8C0KK54, A0A8C0T0U5, A0A8I3MM71
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:219 → 402
      IRF-3; Interferon-regulatory factor 3
    Nucleotide Protein
    Heading Accession and Version

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