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    BRDT bromodomain testis associated [ Canis lupus familiaris (dog) ]

    Gene ID: 479954, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BRDTprovided by VGNC
    Official Full Name
    bromodomain testis associatedprovided by VGNC
    Primary source
    VGNC:VGNC:38522
    See related
    Ensembl:ENSCAFG00845015912
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See BRDT in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (57301471..57359637, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (59625009..59683419, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (57417418..57475552, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (56978517..57036839, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (56954886..57013022, complement)

    Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 8 Neighboring gene creatine kinase B-type-like Neighboring gene uncharacterized LOC111096521 Neighboring gene epoxide hydrolase 4 Neighboring gene protein S100-A11-like Neighboring gene transforming growth factor beta receptor 3 Neighboring gene uncharacterized LOC106558962 Neighboring gene etoposide-induced protein 2.4 homolog Neighboring gene uncharacterized LOC111096398

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysine-acetylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bromodomain testis-specific protein; LOW QUALITY PROTEIN: bromodomain testis-specific protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051810.1 Reference ROS_Cfam_1.0

      Range
      57301471..57359637 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038670151.1 → XP_038526079.1  bromodomain testis-specific protein

      UniProtKB/TrEMBL
      A0A8C0MQ47
      Related
      ENSCAFP00845022379.1, ENSCAFT00845028450.1
      Conserved Domains (4) summary
      cd05497
      Location:26 → 132
      Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
      cd05498
      Location:272 → 373
      Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
      pfam17035
      Location:508 → 570
      BET; Bromodomain extra-terminal - transcription regulation
      pfam17105
      Location:884 → 926
      BRD4_CDT; C-terminal domain of bromodomain protein 4

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049266.1 Alternate UMICH_Zoey_3.1

      Range
      56978517..57036839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038480072.1 → XP_038336000.1  LOW QUALITY PROTEIN: bromodomain testis-specific protein

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

      Range
      56954886..57013022 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038605522.1 → XP_038461450.1  bromodomain testis-specific protein

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

      Range
      57417418..57475552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038541388.1 → XP_038397316.1  bromodomain testis-specific protein

      UniProtKB/TrEMBL
      A0A8C0KLH1, A0A8C0MQ47, A0A8P0SPK7

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      59625009..59683419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_861955.5 → XP_867048.2  bromodomain testis-specific protein

      UniProtKB/TrEMBL
      A0A8C0KLH1, A0A8C0MQ47, A0A8P0SPK7
      Conserved Domains (5) summary
      cd05497
      Location:26 → 132
      Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
      cd05498
      Location:272 → 373
      Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
      pfam15395
      Location:472 → 635
      DUF4617; Domain of unknown function (DUF4617)
      pfam17035
      Location:508 → 572
      BET; Bromodomain extra-terminal - transcription regulation
      pfam17105
      Location:884 → 926
      BRD4_CDT; C-terminal domain of bromodomain protein 4
    Nucleotide Protein
    Heading Accession and Version

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