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    SERBP1 SERPINE1 mRNA binding protein 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 479535, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SERBP1provided by VGNC
    Official Full Name
    SERPINE1 mRNA binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:46018
    See related
    Ensembl:ENSCAFG00845026795
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SERBP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (43355492..43372233)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (43358617..43375343)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (43507528..43524261)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (43321865..43338605)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (43268524..43285249)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 6, catalytic subunit pseudogene Neighboring gene uncharacterized LOC119872017 Neighboring gene uncharacterized LOC102154658 Neighboring gene interleukin 12 receptor subunit beta 2 Neighboring gene uncharacterized LOC111095914 Neighboring gene interleukin 23 receptor Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasminogen activator inhibitor 1 RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      43355492..43372233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038665848.1 → XP_038521776.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0L3K1, A0A8C0RZ75, A0A8I3QC63
      Related
      ENSCAFP00845037094.1, ENSCAFT00845047263.1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038665849.1 → XP_038521777.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 306
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    3. XM_038665851.1 → XP_038521779.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X3

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 297
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    4. XM_038665852.1 → XP_038521780.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X4

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 291
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    5. XM_038665853.1 → XP_038521781.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X5

      Conserved Domains (1) summary
      pfam04774
      Location:114 → 237
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      43321865..43338605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038475967.1 → XP_038331895.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X1

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038475968.1 → XP_038331896.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X2

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 306
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    3. XM_038475969.1 → XP_038331897.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X3

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 297
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    4. XM_038475970.1 → XP_038331898.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X4

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 291
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    5. XM_038475971.1 → XP_038331899.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X5

      Conserved Domains (1) summary
      pfam04774
      Location:114 → 237
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      43268524..43285249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038601283.1 → XP_038457211.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X1

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038601284.1 → XP_038457212.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X2

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 306
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    3. XM_038601285.1 → XP_038457213.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X3

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 297
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    4. XM_038601286.1 → XP_038457214.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X4

      Conserved Domains (2) summary
      pfam04774
      Location:189 → 291
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    5. XM_038601287.1 → XP_038457215.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X5

      Conserved Domains (1) summary
      pfam04774
      Location:114 → 237
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      43507528..43524261
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038537154.1 → XP_038393082.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0L3K1, A0A8C0RZ75, A0A8I3QC63
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038537155.1 → XP_038393083.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 306
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    3. XM_038537156.1 → XP_038393084.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X3

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 297
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    4. XM_038537157.1 → XP_038393085.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X4

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 291
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    5. XM_038537158.1 → XP_038393086.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X5

      Conserved Domains (1) summary
      pfam04774
      Location:114 → 237
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      43358617..43375343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003434641.5 → XP_003434689.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0L3K1, A0A8C0RZ75, A0A8I3QC63
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_536673.7 → XP_536673.3  plasminogen activator inhibitor 1 RNA-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 306
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    3. XM_003434642.5 → XP_003434690.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X3

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 297
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    4. XM_003434640.5 → XP_003434688.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X4

      UniProtKB/TrEMBL
      A0A8C0L3K1
      Conserved Domains (2) summary
      pfam04774
      Location:189 → 291
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:5 → 152
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    5. XM_022418665.2 → XP_022274373.1  plasminogen activator inhibitor 1 RNA-binding protein isoform X5

      Conserved Domains (1) summary
      pfam04774
      Location:114 → 237
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    Nucleotide Protein
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