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    CCSAP centriole, cilia and spindle associated protein [ Canis lupus familiaris (dog) ]

    Gene ID: 479209, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CCSAPprovided by VGNC
    Official Full Name
    centriole, cilia and spindle associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:50870
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    C4H1orf96
    Orthologs
    human mouse all
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    Genomic context

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    See CCSAP in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (9920899..9927859)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (9881370..9888329)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (10292284..10299028)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (9925054..9931784)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (10038852..10045591)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102152919 Neighboring gene uncharacterized LOC119871450 Neighboring gene uncharacterized LOC102152969 Neighboring gene RAB4A, member RAS oncogene family Neighboring gene uncharacterized LOC111095444

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mitotic spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary transition zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    centriole, cilia and spindle-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      9920899..9927859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038662578.1 → XP_038518506.1  centriole, cilia and spindle-associated protein

      Conserved Domains (1) summary
      pfam15748
      Location:8 → 153
      CCSAP; Centriole, cilia and spindle-associated

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      9925054..9931784
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038472925.1 → XP_038328853.1  centriole, cilia and spindle-associated protein

      Conserved Domains (1) summary
      pfam15748
      Location:8 → 153
      CCSAP; Centriole, cilia and spindle-associated

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      10038852..10045591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038598271.1 → XP_038454199.1  centriole, cilia and spindle-associated protein

      Conserved Domains (1) summary
      pfam15748
      Location:8 → 153
      CCSAP; Centriole, cilia and spindle-associated

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      10292284..10299028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038533953.1 → XP_038389881.1  centriole, cilia and spindle-associated protein

      Conserved Domains (1) summary
      pfam15748
      Location:8 → 153
      CCSAP; Centriole, cilia and spindle-associated

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      9881370..9888329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038488668.1 → XP_038344596.1  centriole, cilia and spindle-associated protein

      Conserved Domains (1) summary
      pfam15748
      Location:8 → 153
      CCSAP; Centriole, cilia and spindle-associated
    Nucleotide Protein
    Heading Accession and Version

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