NR2F2 nuclear receptor subfamily 2 group F member 2 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: NR2F2provided by VGNC
Official Full Name: nuclear receptor subfamily 2 group F member 2provided by VGNC
Primary source: VGNC:VGNC:43950
See related: Ensembl:ENSCAFG00845002076
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	3	NC_051807.1 (44548234..44561807, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	3	NC_006585.4 (46838728..46852294, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	3	NC_049224.1 (44625819..44639411, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	3	NC_049263.1 (44070866..44084429, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	3	NC_049744.1 (44300713..44314268, complement)

Chromosome 3 - NC_051807.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

NR2F2_2074 (e-PCR)
- UniSTS:280878

D1Bda25 (e-PCR)
- UniSTS:239772

Nr2f2 (e-PCR), detects polymorphism
- UniSTS:507101

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclear receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables retinoic acid binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in anatomical structure development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: COUP transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051807.1 Reference ROS_Cfam_1.0

Range

44548234..44561807 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038661239.1 → XP_038517167.1 COUP transcription factor 2 isoform X3

UniProtKB/TrEMBL

A0A8C0L5S3, A0A8C0M0I2, A0A8C0TSN9, A0A8I3RRY5

Related

ENSCAFP00845002897.1, ENSCAFT00845003645.1

Conserved Domains (1) summary

cd06948
Location:44 → 278

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
XM_038661237.1 → XP_038517165.1 COUP transcription factor 2 isoform X1

UniProtKB/TrEMBL

A0A8C0L519, A0A8C0R9D3, A0A8C0TP54, A0A8I3MKR4, A0A8I3RQE0

Related

ENSCAFP00845002906.1, ENSCAFT00845003657.1

Conserved Domains (2) summary

cd06948
Location:177 → 411

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:79 → 151

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
XM_038661238.1 → XP_038517166.1 COUP transcription factor 2 isoform X2

Conserved Domains (1) summary

cd06948
Location:91 → 325

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UMICH_Zoey_3.1

Genomic

NC_049263.1 Alternate UMICH_Zoey_3.1

Range

44070866..44084429 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038471807.1 → XP_038327735.1 COUP transcription factor 2 isoform X3

Conserved Domains (1) summary

cd06948
Location:44 → 278

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
XM_038471805.1 → XP_038327733.1 COUP transcription factor 2 isoform X1

Conserved Domains (2) summary

cd06948
Location:177 → 411

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:79 → 151

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
XM_038471806.1 → XP_038327734.1 COUP transcription factor 2 isoform X2

Conserved Domains (1) summary

cd06948
Location:91 → 325

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049744.1 Alternate UNSW_CanFamBas_1.0

Range

44300713..44314268 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038597045.1 → XP_038452973.1 COUP transcription factor 2 isoform X3

Conserved Domains (1) summary

cd06948
Location:44 → 278

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
XM_038597043.1 → XP_038452971.1 COUP transcription factor 2 isoform X1

Conserved Domains (2) summary

cd06948
Location:177 → 411

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:79 → 151

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
XM_038597044.1 → XP_038452972.1 COUP transcription factor 2 isoform X2

Conserved Domains (1) summary

cd06948
Location:91 → 325

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049224.1 Alternate UU_Cfam_GSD_1.0

Range

44625819..44639411 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038532728.1 → XP_038388656.1 COUP transcription factor 2 isoform X3

UniProtKB/TrEMBL

A0A8C0L5S3, A0A8C0M0I2, A0A8C0TSN9, A0A8I3RRY5

Conserved Domains (1) summary

cd06948
Location:44 → 278

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
XM_038532726.1 → XP_038388654.1 COUP transcription factor 2 isoform X1

UniProtKB/TrEMBL

A0A8C0L519, A0A8C0R9D3, A0A8C0TP54, A0A8I3MKR4, A0A8I3RQE0

Conserved Domains (2) summary

cd06948
Location:177 → 411

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:79 → 151

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
XM_038532727.1 → XP_038388655.1 COUP transcription factor 2 isoform X2

Conserved Domains (1) summary

cd06948
Location:91 → 325

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

46838728..46852294 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_536178.7 → XP_536178.2 COUP transcription factor 2 isoform X3

See identical proteins and their annotated locations for XP_536178.2

UniProtKB/TrEMBL

A0A8C0L5S3, A0A8C0M0I2, A0A8C0TSN9, A0A8I3RRY5

Conserved Domains (1) summary

cd06948
Location:44 → 278

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
XM_844404.7 → XP_849497.2 COUP transcription factor 2 isoform X1

See identical proteins and their annotated locations for XP_849497.2

UniProtKB/TrEMBL

A0A8C0L519, A0A8C0R9D3, A0A8C0TP54, A0A8I3MKR4, A0A8I3RQE0

Conserved Domains (2) summary

cd06948
Location:177 → 411

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:79 → 151

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
XM_038474150.1 → XP_038330078.1 COUP transcription factor 2 isoform X2

Conserved Domains (1) summary

cd06948
Location:91 → 325

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family