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    ATRN attractin [ Canis lupus familiaris (dog) ]

    Gene ID: 477170, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATRNprovided by VGNC
    Official Full Name
    attractinprovided by VGNC
    Primary source
    VGNC:VGNC:38295
    See related
    Ensembl:ENSCAFG00845014630
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ATRN in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 24 NC_051828.1 (18117068..18278292, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 24 NC_006606.4 (17528104..17688488, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 24 NC_049245.1 (18150655..18311906, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 24 NC_049284.1 (17766353..17872211, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 24 NC_049765.1 (17823557..17984479, complement)

    Chromosome 24 - NC_051828.1Genomic Context describing neighboring genes Neighboring gene sialic acid binding Ig like lectin 1 Neighboring gene uncharacterized LOC111092057 Neighboring gene ADAM metallopeptidase domain 33 Neighboring gene GDNF family receptor alpha 4 Neighboring gene protein FAM133B-like Neighboring gene uncharacterized LOC106557679 Neighboring gene uncharacterized LOC119865631 Neighboring gene dynein axonemal assembly factor 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: attractin; attractin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051828.1 Reference ROS_Cfam_1.0

      Range
      18117068..18278292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038433263.1 → XP_038289191.1  attractin isoform X3

      UniProtKB/TrEMBL
      A0A8I3NQ12
      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    2. XM_038433261.1 → XP_038289189.1  attractin isoform X1

      UniProtKB/TrEMBL
      A0A8C0JQD0, A0A8C0RSH0, A0A8I3NQ12, A0A8I3NUQ7
      Related
      ENSCAFP00845020792.1, ENSCAFT00845026376.1
      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    3. XM_038433262.1 → XP_038289190.1  attractin isoform X2

      UniProtKB/TrEMBL
      A0A8C0PIC7, A0A8I3NQ12
      Conserved Domains (7) summary
      PLN02153
      Location:502 → 619
      PLN02153; epithiospecifier protein
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049284.1 Alternate UMICH_Zoey_3.1

      Range
      17766353..17872211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038508467.1 → XP_038364395.1  LOW QUALITY PROTEIN: attractin isoform X4

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049765.1 Alternate UNSW_CanFamBas_1.0

      Range
      17823557..17984479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038635982.1 → XP_038491910.1  attractin isoform X3

      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    2. XM_038635980.1 → XP_038491908.1  attractin isoform X1

      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    3. XM_038635981.1 → XP_038491909.1  attractin isoform X2

      Conserved Domains (7) summary
      PLN02153
      Location:502 → 619
      PLN02153; epithiospecifier protein
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049245.1 Alternate UU_Cfam_GSD_1.0

      Range
      18150655..18311906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038571736.1 → XP_038427664.1  attractin isoform X3

      UniProtKB/TrEMBL
      A0A8I3NQ12
      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    2. XM_038571734.1 → XP_038427662.1  attractin isoform X1

      UniProtKB/TrEMBL
      A0A8C0JQD0, A0A8C0RSH0, A0A8I3NQ12, A0A8I3NUQ7
      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    3. XM_038571735.1 → XP_038427663.1  attractin isoform X2

      UniProtKB/TrEMBL
      A0A8C0PIC7, A0A8I3NQ12
      Conserved Domains (7) summary
      PLN02153
      Location:502 → 619
      PLN02153; epithiospecifier protein
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      17528104..17688488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_534360.7 → XP_534360.2  LOW QUALITY PROTEIN: attractin isoform X1

      UniProtKB/TrEMBL
      A0A8C0JQD0, A0A8C0RSH0, A0A8I3NQ12, A0A8I3NUQ7
      Conserved Domains (7) summary
      PHA03098
      Location:315 → 477
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:520 → 621
      PRK14131; N-acetylneuraminate epimerase
      cd00041
      Location:120 → 235
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1050 → 1095
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:489 → 538
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:920 → 971
      PSI; Plexin repeat
      cl02432
      Location:776 → 908
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    Nucleotide Protein Strain
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