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    SLC22A6 solute carrier family 22 member 6 [ Canis lupus familiaris (dog) ]

    Gene ID: 476050, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC22A6provided by VGNC
    Official Full Name
    solute carrier family 22 member 6provided by VGNC
    Primary source
    VGNC:VGNC:46280
    See related
    Ensembl:ENSCAFG00845007241
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SLC22A6 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (54782055..54789820)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (52342543..52350303)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (54245739..54253490)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (53884029..53891784)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (53458362..53466122)

    Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene vasodilator-stimulated phosphoprotein-like Neighboring gene uncharacterized LOC102157191 Neighboring gene solute carrier family 22 member 8 Neighboring gene uncharacterized LOC119864276 Neighboring gene cholinergic receptor muscarinic 1 Neighboring gene solute carrier family 3 member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sodium-independent organic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in organic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 22 member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051822.1 Reference ROS_Cfam_1.0

      Range
      54782055..54789820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038425260.1 → XP_038281188.1  solute carrier family 22 member 6 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJV2, A0A8C0MLE3, A0A8C0SZD7, A0A8I3N270
      Related
      ENSCAFP00845009994.1, ENSCAFT00845012822.1
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 515
      2A0119; cation transport protein

    2. XM_038425261.1 → XP_038281189.1  solute carrier family 22 member 6 isoform X2

      UniProtKB/TrEMBL
      A0A8C0MLE3
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 454
      2A0119; cation transport protein

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049278.1 Alternate UMICH_Zoey_3.1

      Range
      53884029..53891784
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038501528.1 → XP_038357456.1  solute carrier family 22 member 6 isoform X1

      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 515
      2A0119; cation transport protein

    2. XM_038501529.1 → XP_038357457.1  solute carrier family 22 member 6 isoform X2

      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 454
      2A0119; cation transport protein

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

      Range
      53458362..53466122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038628355.1 → XP_038484283.1  solute carrier family 22 member 6 isoform X1

      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 515
      2A0119; cation transport protein

    2. XM_038628356.1 → XP_038484284.1  solute carrier family 22 member 6 isoform X2

      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 454
      2A0119; cation transport protein

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

      Range
      54245739..54253490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038564214.1 → XP_038420142.1  solute carrier family 22 member 6 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJV2, A0A8C0MLE3, A0A8C0SZD7, A0A8I3N270
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 515
      2A0119; cation transport protein

    2. XM_038564216.1 → XP_038420144.1  solute carrier family 22 member 6 isoform X2

      UniProtKB/TrEMBL
      A0A8C0MLE3
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 454
      2A0119; cation transport protein

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      52342543..52350303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_533258.7 → XP_533258.1  solute carrier family 22 member 6 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJV2, A0A8C0MLE3, A0A8C0SZD7, A0A8I3N270
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 515
      2A0119; cation transport protein

    2. XM_038454151.1 → XP_038310079.1  solute carrier family 22 member 6 isoform X2

      UniProtKB/TrEMBL
      A0A8C0MLE3
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 454
      2A0119; cation transport protein
    Nucleotide Protein
    Heading Accession and Version

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