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    SRSF7 serine and arginine rich splicing factor 7 [ Canis lupus familiaris (dog) ]

    Gene ID: 475730, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SRSF7provided by VGNC
    Official Full Name
    serine and arginine rich splicing factor 7provided by VGNC
    Primary source
    VGNC:VGNC:46821
    See related
    Ensembl:ENSCAFG00845021451
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    SFRS7
    Orthologs
    human mouse all
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    Genomic context

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    See SRSF7 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (31462098..31471656, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (30622954..30632513, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (30967454..30977016, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (30684547..30694100, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (30754277..30763838, complement)

    Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene barrier to autointegration factor 1 pseudogene Neighboring gene galactose mutarotase Neighboring gene tetratricopeptide repeat domain 39D Neighboring gene gem nuclear organelle associated protein 6 Neighboring gene DExH-box helicase 57

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light-activated BioID - an optically activated proximity labeling system to study protein-protein interactions. Shafraz O, et al. J Cell Sci, 2023 Oct 1. PMID 37756605, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ASAP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor 7
    Names
    splicing factor, arginine/serine-rich 7, 35kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051821.1 Reference ROS_Cfam_1.0

      Range
      31462098..31471656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038691297.1 → XP_038547225.1  serine/arginine-rich splicing factor 7 isoform X4

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    2. XM_038691295.1 → XP_038547223.1  serine/arginine-rich splicing factor 7 isoform X2

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    3. XM_038691299.1 → XP_038547227.1  serine/arginine-rich splicing factor 7 isoform X6

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    4. XM_038691296.1 → XP_038547224.1  serine/arginine-rich splicing factor 7 isoform X3

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    5. XM_038691298.1 → XP_038547226.1  serine/arginine-rich splicing factor 7 isoform X5

      UniProtKB/TrEMBL
      A0A8I3S2F3, A0A8P0TRP5
      Related
      ENSCAFP00845029689.1, ENSCAFT00845037890.1
      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    6. XM_038691293.1 → XP_038547221.1  serine/arginine-rich splicing factor 7 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LDY3, A0A8C0MLI4, A0A8I3P7Y3
      Related
      ENSCAFP00845029647.1, ENSCAFT00845037839.1
      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049277.1 Alternate UMICH_Zoey_3.1

      Range
      30684547..30694100 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038498760.1 → XP_038354688.1  serine/arginine-rich splicing factor 7 isoform X4

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    2. XM_038498758.1 → XP_038354686.1  serine/arginine-rich splicing factor 7 isoform X2

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    3. XM_038498762.1 → XP_038354690.1  serine/arginine-rich splicing factor 7 isoform X6

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    4. XM_038498759.1 → XP_038354687.1  serine/arginine-rich splicing factor 7 isoform X3

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    5. XM_038498761.1 → XP_038354689.1  serine/arginine-rich splicing factor 7 isoform X5

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    6. XM_038498757.1 → XP_038354685.1  serine/arginine-rich splicing factor 7 isoform X1

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

      Range
      30754277..30763838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038625368.1 → XP_038481296.1  serine/arginine-rich splicing factor 7 isoform X4

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    2. XM_038625366.1 → XP_038481294.1  serine/arginine-rich splicing factor 7 isoform X2

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    3. XM_038625370.1 → XP_038481298.1  serine/arginine-rich splicing factor 7 isoform X6

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    4. XM_038625367.1 → XP_038481295.1  serine/arginine-rich splicing factor 7 isoform X3

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    5. XM_038625369.1 → XP_038481297.1  serine/arginine-rich splicing factor 7 isoform X5

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    6. XM_038625365.1 → XP_038481293.1  serine/arginine-rich splicing factor 7 isoform X1

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

      Range
      30967454..30977016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038561318.1 → XP_038417246.1  serine/arginine-rich splicing factor 7 isoform X4

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    2. XM_038561316.1 → XP_038417244.1  serine/arginine-rich splicing factor 7 isoform X2

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    3. XM_038561320.1 → XP_038417248.1  serine/arginine-rich splicing factor 7 isoform X6

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    4. XM_038561317.1 → XP_038417245.1  serine/arginine-rich splicing factor 7 isoform X3

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    5. XM_038561319.1 → XP_038417247.1  serine/arginine-rich splicing factor 7 isoform X5

      UniProtKB/TrEMBL
      A0A8I3S2F3, A0A8P0TRP5
      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    6. XM_038561315.1 → XP_038417243.1  serine/arginine-rich splicing factor 7 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LDY3, A0A8C0MLI4, A0A8I3P7Y3
      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      30622954..30632513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038453027.1 → XP_038308955.1  serine/arginine-rich splicing factor 7 isoform X4

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    2. XM_038453025.1 → XP_038308953.1  serine/arginine-rich splicing factor 7 isoform X2

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    3. XM_005630371.3 → XP_005630428.1  serine/arginine-rich splicing factor 7 isoform X6

      See identical proteins and their annotated locations for XP_005630428.1

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    4. XM_005630370.3 → XP_005630427.1  serine/arginine-rich splicing factor 7 isoform X3

      See identical proteins and their annotated locations for XP_005630427.1

      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    5. XM_003432189.4 → XP_003432237.1  serine/arginine-rich splicing factor 7 isoform X5

      See identical proteins and their annotated locations for XP_003432237.1

      UniProtKB/TrEMBL
      A0A8I3S2F3, A0A8P0TRP5
      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

    6. XM_532939.6 → XP_532939.2  serine/arginine-rich splicing factor 7 isoform X1

      See identical proteins and their annotated locations for XP_532939.2

      UniProtKB/TrEMBL
      A0A8C0LDY3, A0A8C0MLI4, A0A8I3P7Y3
      Conserved Domains (1) summary
      cd12646
      Location:12 → 88
      RRM_SRSF7; RNA recognition motif (RRM) found in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)
    Nucleotide Protein
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