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    SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 475541, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMARCD3provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3provided by VGNC
    Primary source
    VGNC:VGNC:46539
    See related
    Ensembl:ENSCAFG00845010900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCD3 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (17001502..17033029, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (15887117..15918657, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (16006005..16037553, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (15373508..15405014, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (15955205..15986728, complement)

    Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily F member 2 Neighboring gene chondroitin polymerizing factor 2 Neighboring gene microRNA mir-671 Neighboring gene uncharacterized LOC111090254 Neighboring gene negative regulator of ubiquitin like proteins 1 Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051820.1 Reference ROS_Cfam_1.0

      Range
      17001502..17033029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038689515.1 → XP_038545443.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JVL5, A0A8C0PEQ2, A0A8C0QB23, A0A8I3N641
      Related
      ENSCAFP00845015031.1, ENSCAFT00845019238.1
      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    2. XM_038689516.1 → XP_038545444.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JVL5, A0A8C0PEQ2, A0A8C0QB23, A0A8I3N641
      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    3. XM_038689514.1 → XP_038545442.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JWZ5, A0A8C0QHU2, A0A8I3RW50, A0A8P0SAD9
      Related
      ENSCAFP00845015077.1, ENSCAFT00845019290.1
      Conserved Domains (1) summary
      cd17676
      Location:265 → 338
      SWIB_BAF60C; SWIB domain found in BRG1-associated factor 60C (BAF60C) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049276.1 Alternate UMICH_Zoey_3.1

      Range
      15373508..15405014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038497320.1 → XP_038353248.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    2. XM_038497321.1 → XP_038353249.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    3. XM_038497319.1 → XP_038353247.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1

      Conserved Domains (1) summary
      cd17676
      Location:265 → 338
      SWIB_BAF60C; SWIB domain found in BRG1-associated factor 60C (BAF60C) and similar proteins

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

      Range
      15955205..15986728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038623741.1 → XP_038479669.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    2. XM_038623742.1 → XP_038479670.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    3. XM_038623740.1 → XP_038479668.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1

      Conserved Domains (1) summary
      cd17676
      Location:265 → 338
      SWIB_BAF60C; SWIB domain found in BRG1-associated factor 60C (BAF60C) and similar proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

      Range
      16006005..16037553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038559753.1 → XP_038415681.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JVL5, A0A8C0PEQ2, A0A8C0QB23, A0A8I3N641
      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    2. XM_038559754.1 → XP_038415682.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JVL5, A0A8C0PEQ2, A0A8C0QB23, A0A8I3N641
      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    3. XM_038559752.1 → XP_038415680.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JWZ5, A0A8C0QHU2, A0A8I3RW50, A0A8P0SAD9
      Conserved Domains (1) summary
      cd17676
      Location:265 → 338
      SWIB_BAF60C; SWIB domain found in BRG1-associated factor 60C (BAF60C) and similar proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      15887117..15918657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005629688.4 → XP_005629745.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JVL5, A0A8C0PEQ2, A0A8C0QB23, A0A8I3N641
      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    2. XM_038452801.1 → XP_038308729.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8C0JVL5, A0A8C0PEQ2, A0A8C0QB23, A0A8I3N641
      Conserved Domains (2) summary
      NF033761
      Location:2 → 108
      gliding_GltJ; adventurous gliding motility protein GltJ
      cl38907
      Location:252 → 325
      SWIB-MDM2; SWIB/MDM2 domain family

    3. XM_845234.6 → XP_850327.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JWZ5, A0A8C0QHU2, A0A8I3RW50, A0A8P0SAD9
      Conserved Domains (1) summary
      cd17676
      Location:265 → 338
      SWIB_BAF60C; SWIB domain found in BRG1-associated factor 60C (BAF60C) and similar proteins
    Nucleotide Protein
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